biology/plinkseq/Makefile

   1 # Created by: Jason Bacon <bacon4000@gmail.com>
   2 # $FreeBSD$
   3
   4 PORTNAME=       plinkseq
   5 PORTVERSION=    0.10
   6 CATEGORIES=     biology science
   7 MASTER_SITES=   http://psychgen.u.hpc.mssm.edu/plinkseq_downloads/
   8 # Default DISTNAME is correct, so leave it alone.
   9 DISTFILES=      ${PORTNAME}-src-${PORTVERSION}.tgz
  10
  11 MAINTAINER=     bacon4000@gmail.com
  12 COMMENT=        Toolset for working with human genetic variation data
  13
  14 LICENSE=        GPLv2
  15
  16 BROKEN_powerpc64=       Does not build
  17
  18 USES=           libtool gmake
  19
  20 post-patch:
  21         ${REINPLACE_CMD} \
  22                 -e 's|PF_INET|AF_INET|g' \
  23                 ${WRKSRC}/sources/mongoose/sources/lib/mongoose.c
  24         ${REINPLACE_CMD} \
  25                 -e 's|g++|${CXX}|g' \
  26                 -e 's|gcc|${CC}|g' \
  27                 -e 's|CXXFLAGS = -O3|CXXFLAGS = ${CXXFLAGS}|g' \
  28                 -e 's|ALL_CFLAGS =-O3|ALL_CFLAGS = ${CFLAGS}|g' \
  29                 ${WRKSRC}/config_defs.Makefile
  30         ${REINPLACE_CMD} \
  31                 -e 's| -ldl||g' \
  32                 -e 's| $$(STATIC_FLAG)||g' \
  33                 ${WRKSRC}/Makefile
  34
  35 do-install:
  36 .for f in behead browser gcol mm mongoose pdas pseq smp tab2vcf
  37         ${INSTALL_PROGRAM} ${WRKSRC}/build/execs/${f} ${STAGEDIR}${PREFIX}/bin
  38 .endfor
  39         ${INSTALL_DATA} ${WRKSRC}/sources/plinkseq/build/lib/libplinkseq.a \
  40                 ${STAGEDIR}${PREFIX}/lib
  41
  42 .include <bsd.port.mk>