biology/tinker/pkg-plist

   1 bin/alchemy
   2 bin/analyze_t
   3 bin/anneal
   4 bin/archive
   5 bin/bar
   6 bin/correlate
   7 bin/crystal
   8 bin/diffuse
   9 bin/distgeom
  10 bin/document
  11 bin/dynamic
  12 bin/gda
  13 bin/intedit
  14 bin/intxyz
  15 bin/minimize
  16 bin/minirot
  17 bin/minrigid
  18 bin/molxyz
  19 bin/monte
  20 bin/newton
  21 bin/newtrot
  22 bin/nucleic
  23 bin/optimize
  24 bin/optirot
  25 bin/optrigid
  26 bin/path
  27 bin/pdbxyz
  28 bin/polarize
  29 bin/poledit
  30 bin/potential
  31 bin/prmedit
  32 bin/protein
  33 bin/pss
  34 bin/pssrigid
  35 bin/pssrot
  36 bin/radial
  37 bin/saddle
  38 bin/scan
  39 bin/sniffer
  40 bin/spacefill
  41 bin/spectrum
  42 bin/superpose
  43 bin/sybylxyz
  44 bin/testgrad
  45 bin/testhess
  46 bin/testpair
  47 bin/testpol
  48 bin/testrot
  49 bin/timer
  50 bin/timerot
  51 bin/torsfit
  52 bin/valence
  53 bin/vibbig
  54 bin/vibrate
  55 bin/vibrot
  56 bin/xtalfit
  57 bin/xtalmin
  58 bin/xyzedit
  59 bin/xyzint
  60 bin/xyzpdb
  61 bin/xyzsybyl
  62 %%PORTDOCS%%%%DOCSDIR%%/0README
  63 %%PORTDOCS%%%%DOCSDIR%%/ffe-guide.pdf
  64 %%PORTDOCS%%%%DOCSDIR%%/guide.pdf
  65 %%PORTDOCS%%%%DOCSDIR%%/license.pdf
  66 %%PORTDOCS%%%%DOCSDIR%%/license.txt
  67 %%PORTDOCS%%%%DOCSDIR%%/summary.pdf
  68 %%PORTDOCS%%%%DOCSDIR%%/summary.txt
  69 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/0README
  70 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/alatet.int
  71 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/alatet.key
  72 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/alatet.seq
  73 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/alatet.xyz
  74 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/alkane.key
  75 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/alkane.xyz
  76 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/ammonia.key
  77 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/ammonia.xyz
  78 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/amoeba.key
  79 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/amoeba.xyz
  80 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/arach.int
  81 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/arach.key
  82 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/arach.xyz
  83 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/azulene.int
  84 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/azulene.key
  85 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/azulene.xyz
  86 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/bdna.int
  87 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/bdna.key
  88 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/bdna.make
  89 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/bdna.pdb
  90 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/bdna.seq
  91 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/bdna.xyz
  92 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/bearing.key
  93 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/bearing.xyz
  94 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/bearing2.key
  95 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/benzamidine.key
  96 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/benzamidine.xyz
  97 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/benzbox.key
  98 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/benzbox.xyz
  99 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/benzene.int
 100 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/benzene.key
 101 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/benzene.xyz
 102 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/book.key
 103 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/book.xyz
 104 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/bowl.int
 105 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/bowl.key
 106 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/bowl.xyz
 107 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/bowl2.key
 108 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/bowl2.xyz
 109 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/bowl3.key
 110 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/bowl3.xyz
 111 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/bucky.int
 112 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/bucky.key
 113 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/bucky.xyz
 114 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/butane.int
 115 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/butane.key
 116 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/butane.xyz
 117 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/butane2.int
 118 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/butane2.key
 119 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/butane2.xyz
 120 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/butanes.dyn
 121 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/butanes.key
 122 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/butanes.xyz
 123 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/butanex.key
 124 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/butanex.xyz
 125 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/butopls.int
 126 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/butopls.key
 127 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/butopls.xyz
 128 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/butopls2.int
 129 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/butopls2.key
 130 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/butopls2.xyz
 131 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/c5.int
 132 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/c5.key
 133 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/c5.seq
 134 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/c5.xyz
 135 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/c7a.int
 136 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/c7a.key
 137 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/c7a.seq
 138 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/c7a.xyz
 139 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/c7e.int
 140 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/c7e.key
 141 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/c7e.seq
 142 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/c7e.xyz
 143 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/cage.key
 144 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/cage.xyz
 145 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/calmodulin.key
 146 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/calmodulin.pdb
 147 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/calmodulin.seq
 148 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/calmodulin.xyz
 149 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/cawater.key
 150 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/cawater.xyz
 151 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/cln025.key
 152 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/cln025.make
 153 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/cln025.pdb
 154 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/cln025.seq
 155 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/cln025.xyz
 156 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/copper.key
 157 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/copper.xyz
 158 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/cpentene.key
 159 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/cpentene.xyz
 160 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/crambin.dyn
 161 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/crambin.key
 162 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/crambin.pdb
 163 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/crambin.seq
 164 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/crambin.xyz
 165 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/crambinx.key
 166 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/crambinx.xyz
 167 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/crown.int
 168 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/crown.key
 169 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/crown.xyz
 170 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/cychept.int
 171 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/cychept.key
 172 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/cychept.xyz
 173 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/cyclo.int
 174 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/cyclo.key
 175 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/cyclo.xyz
 176 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/cyclo2.int
 177 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/cyclo2.key
 178 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/cyclo2.xyz
 179 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/cycprop.key
 180 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/cycprop.xyz
 181 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/dang.key
 182 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/dang.xyz
 183 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/deltorphin.int
 184 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/deltorphin.key
 185 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/deltorphin.make
 186 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/deltorphin.seq
 187 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/deltorphin.xyz
 188 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/dhfr.key
 189 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/dhfr.pdb
 190 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/dhfr.seq
 191 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/dhfr.xyz
 192 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/dhfr2.key
 193 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/dhfr2.seq
 194 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/dhfr2.xyz
 195 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/diamond.key
 196 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/diamond.xyz
 197 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/diene.int
 198 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/diene.key
 199 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/diene.xyz
 200 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/dimethane.key
 201 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/dimethane.xyz
 202 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/dmp.key
 203 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/dmp.xyz
 204 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/enkephalin.int
 205 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/enkephalin.key
 206 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/enkephalin.make
 207 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/enkephalin.seq
 208 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/enkephalin.xyz
 209 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/ermer.int
 210 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/ermer.key
 211 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/ermer.xyz
 212 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/ester.key
 213 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/ester.xyz
 214 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/ethane.int
 215 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/ethane.key
 216 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/ethane.xyz
 217 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/ethanol.int
 218 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/ethanol.key
 219 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/ethanol.xyz
 220 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/ether.key
 221 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/ether.xyz
 222 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/etherbox.dyn
 223 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/etherbox.key
 224 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/etherbox.xyz
 225 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/ethylene.int
 226 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/ethylene.key
 227 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/ethylene.xyz
 228 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/flane.int
 229 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/flane.key
 230 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/flane.xyz
 231 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/form.key
 232 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/form.xyz
 233 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/formbig.key
 234 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/formbig.xyz
 235 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/formbox.dyn
 236 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/formbox.key
 237 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/formbox.xyz
 238 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/formopls.dyn
 239 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/formopls.key
 240 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/formopls.xyz
 241 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/furan.int
 242 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/furan.key
 243 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/furan.xyz
 244 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/glucose.key
 245 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/glucose.xyz
 246 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/glycerol.dyn
 247 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/glycerol.key
 248 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/glycerol.xyz
 249 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/graphite.key
 250 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/graphite.xyz
 251 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/helix.dyn
 252 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/helix.key
 253 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/helix.xyz
 254 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/heme.key
 255 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/heme.xyz
 256 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/hexane.int
 257 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/hexane.key
 258 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/hexane.xyz
 259 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/hexanes.dyn
 260 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/hexanes.key
 261 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/hexanes.xyz
 262 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/iamoeba.key
 263 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/iamoeba.xyz
 264 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/imidazole.int
 265 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/imidazole.key
 266 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/imidazole.xyz
 267 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/imine.int
 268 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/imine.key
 269 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/imine.xyz
 270 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/indole.key
 271 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/indole.xyz
 272 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/lactam.key
 273 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/lactam.xyz
 274 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/lipid.key
 275 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/lipid.xyz
 276 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/lj38.key
 277 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/lj38.xyz
 278 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/melittin.key
 279 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/melittin.pdb
 280 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/melittin.seq
 281 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/melittin.xyz
 282 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/membrane.key
 283 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/membrane.xyz
 284 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/meohbox.key
 285 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/meohbox.xyz
 286 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/methane.int
 287 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/methane.key
 288 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/methane.xyz
 289 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/methanol.key
 290 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/methanol.xyz
 291 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/mgwater.key
 292 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/mgwater.xyz
 293 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/mm3.key
 294 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/mm3.xyz
 295 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/nacl.key
 296 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/nacl.xyz
 297 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/nada.key
 298 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/nada.xyz
 299 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/naphthalene.int
 300 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/naphthalene.key
 301 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/naphthalene.xyz
 302 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/naphthax.frac
 303 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/naphthax.key
 304 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/naphthax.xyz
 305 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/nitrile.key
 306 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/nitrile.xyz
 307 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/nitrogen.dyn
 308 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/nitrogen.key
 309 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/nitrogen.xyz
 310 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/nma.int
 311 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/nma.key
 312 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/nma.xyz
 313 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/nmabox.dyn
 314 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/nmabox.key
 315 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/nmabox.xyz
 316 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/nmf.key
 317 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/nmf.xyz
 318 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/nstilbene.int
 319 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/nstilbene.key
 320 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/nstilbene.xyz
 321 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/octane.int
 322 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/octane.key
 323 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/octane.xyz
 324 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/octane2.int
 325 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/octane2.key
 326 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/octane2.xyz
 327 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/octene.dyn
 328 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/octene.key
 329 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/octene.xyz
 330 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/palmitate.int
 331 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/palmitate.key
 332 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/palmitate.xyz
 333 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/pentane.frac
 334 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/pentane.key
 335 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/pentane.xyz
 336 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/peptide.int
 337 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/peptide.key
 338 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/peptide.make
 339 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/peptide.pdb
 340 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/peptide.seq
 341 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/peptide.xyz
 342 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/phenanth.key
 343 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/phenanth.xyz
 344 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/photo.key
 345 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/photo.pdb
 346 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/photo.seq
 347 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/photo.xyz
 348 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/pol3.key
 349 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/pol3.xyz
 350 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/polyala.key
 351 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/polyala.xyz
 352 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/prism.key
 353 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/prism.xyz
 354 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/propane.key
 355 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/propane.xyz
 356 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/propellane.int
 357 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/propellane.key
 358 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/propellane.xyz
 359 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/propyne.key
 360 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/propyne.xyz
 361 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/pyridine.int
 362 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/pyridine.key
 363 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/pyridine.xyz
 364 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/pyrrole.int
 365 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/pyrrole.key
 366 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/pyrrole.xyz
 367 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/retinoic.key
 368 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/retinoic.xyz
 369 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/ring.key
 370 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/ring.xyz
 371 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/skunk.key
 372 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/skunk.xyz
 373 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/spc.key
 374 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/spc.xyz
 375 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/sterol.key
 376 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/sterol.xyz
 377 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/styrene.int
 378 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/styrene.key
 379 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/styrene.xyz
 380 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/terphenyl.key
 381 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/terphenyl.xyz
 382 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/tfe.key
 383 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/tfe.xyz
 384 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/thiadiene.int
 385 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/thiadiene.key
 386 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/thiadiene.xyz
 387 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/thiophene.int
 388 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/thiophene.key
 389 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/thiophene.xyz
 390 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/thr.int
 391 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/thr.key
 392 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/thr.xyz
 393 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/tip3f.key
 394 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/tip3f.xyz
 395 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/tip3p.key
 396 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/tip3p.xyz
 397 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/tip4f.key
 398 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/tip4f.xyz
 399 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/tip4p.key
 400 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/tip4p.xyz
 401 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/tip5p.key
 402 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/tip5p.xyz
 403 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/trpcage.key
 404 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/trpcage.pdb
 405 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/trpcage.seq
 406 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/trpcage.xyz
 407 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/ubiquitin.key
 408 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/ubiquitin.pdb
 409 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/ubiquitin.seq
 410 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/ubiquitin.xyz
 411 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/ubiquitin2.key
 412 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/ubiquitin2.seq
 413 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/ubiquitin2.xyz
 414 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/urea.frac
 415 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/urea.key
 416 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/urea.xyz
 417 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/water.int
 418 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/water.key
 419 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/water.xyz
 420 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/waterball.key
 421 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/waterball.xyz
 422 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/waterbig.key
 423 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/waterbig.xyz
 424 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/waterbox.dyn
 425 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/waterbox.key
 426 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/waterbox.xyz
 427 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/waterdot.dyn
 428 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/waterdot.key
 429 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/waterdot.xyz
 430 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/waterglobe.key
 431 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/waterglobe.xyz
 432 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/waterhuge.key
 433 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/waterhuge.xyz
 434 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/waterslab.dyn
 435 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/waterslab.key
 436 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/waterslab.xyz
 437 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/watersmall.dyn
 438 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/watersmall.key
 439 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/watersmall.xyz
 440 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/watertiny.dyn
 441 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/watertiny.key
 442 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/watertiny.xyz
 443 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/white.int
 444 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/white.key
 445 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/white.xyz
 446 %%DATADIR%%/bench/0README
 447 %%DATADIR%%/bench/bench1.key
 448 %%DATADIR%%/bench/bench1.run
 449 %%DATADIR%%/bench/bench1.xyz
 450 %%DATADIR%%/bench/bench2.key
 451 %%DATADIR%%/bench/bench2.run
 452 %%DATADIR%%/bench/bench2.xyz
 453 %%DATADIR%%/bench/bench3.key
 454 %%DATADIR%%/bench/bench3.run
 455 %%DATADIR%%/bench/bench3.xyz
 456 %%DATADIR%%/bench/bench4.dyn0
 457 %%DATADIR%%/bench/bench4.key
 458 %%DATADIR%%/bench/bench4.log
 459 %%DATADIR%%/bench/bench4.run
 460 %%DATADIR%%/bench/bench4.xyz
 461 %%DATADIR%%/bench/bench5.dyn0
 462 %%DATADIR%%/bench/bench5.key
 463 %%DATADIR%%/bench/bench5.log
 464 %%DATADIR%%/bench/bench5.run
 465 %%DATADIR%%/bench/bench5.xyz
 466 %%DATADIR%%/bench/bench6.key
 467 %%DATADIR%%/bench/bench6.log
 468 %%DATADIR%%/bench/bench6.run
 469 %%DATADIR%%/bench/bench6.xyz
 470 %%DATADIR%%/bench/bench7.key
 471 %%DATADIR%%/bench/bench7.log
 472 %%DATADIR%%/bench/bench7.run
 473 %%DATADIR%%/bench/bench7.xyz
 474 %%DATADIR%%/bench/results-2.3
 475 %%DATADIR%%/bench/results-2.4
 476 %%DATADIR%%/bench/results-2.9
 477 %%DATADIR%%/bench/results-3.1
 478 %%DATADIR%%/bench/results-3.2
 479 %%DATADIR%%/bench/results-3.4
 480 %%DATADIR%%/bench/results-3.5
 481 %%DATADIR%%/bench/results-3.7
 482 %%DATADIR%%/bench/results-3.8
 483 %%DATADIR%%/bench/results-3.9
 484 %%DATADIR%%/bench/results-4.0
 485 %%DATADIR%%/bench/results-4.1
 486 %%DATADIR%%/bench/results-4.2
 487 %%DATADIR%%/bench/results-4.3
 488 %%DATADIR%%/bench/results-5.0
 489 %%DATADIR%%/bench/results-5.1
 490 %%DATADIR%%/bench/results-6.0
 491 %%DATADIR%%/bench/results-6.2
 492 %%DATADIR%%/params/0README
 493 %%DATADIR%%/params/amber94.prm
 494 %%DATADIR%%/params/amber96.prm
 495 %%DATADIR%%/params/amber98.prm
 496 %%DATADIR%%/params/amber99.prm
 497 %%DATADIR%%/params/amber99sb.prm
 498 %%DATADIR%%/params/amoeba04.prm
 499 %%DATADIR%%/params/amoeba09.prm
 500 %%DATADIR%%/params/amoebabio09.prm
 501 %%DATADIR%%/params/amoebapro04.prm
 502 %%DATADIR%%/params/amoebapro13.prm
 503 %%DATADIR%%/params/charmm19.prm
 504 %%DATADIR%%/params/charmm22.prm
 505 %%DATADIR%%/params/charmm22cmap.prm
 506 %%DATADIR%%/params/dang.prm
 507 %%DATADIR%%/params/hoch.prm
 508 %%DATADIR%%/params/iwater.prm
 509 %%DATADIR%%/params/mm2.prm
 510 %%DATADIR%%/params/mm3.prm
 511 %%DATADIR%%/params/mm3pro.prm
 512 %%DATADIR%%/params/mmff.prm
 513 %%DATADIR%%/params/oplsaa.prm
 514 %%DATADIR%%/params/oplsaal.prm
 515 %%DATADIR%%/params/oplsua.prm
 516 %%DATADIR%%/params/smoothaa.prm
 517 %%DATADIR%%/params/smoothua.prm
 518 %%DATADIR%%/params/tiny.prm
 519 %%DATADIR%%/params/water.prm
 520 %%DATADIR%%/test/0README
 521 %%DATADIR%%/test/anion.dat
 522 %%DATADIR%%/test/anion.dyn0
 523 %%DATADIR%%/test/anion.key
 524 %%DATADIR%%/test/anion.log
 525 %%DATADIR%%/test/anion.run
 526 %%DATADIR%%/test/anion.xyz
 527 %%DATADIR%%/test/argon.1st
 528 %%DATADIR%%/test/argon.key
 529 %%DATADIR%%/test/argon.log
 530 %%DATADIR%%/test/argon.run
 531 %%DATADIR%%/test/cluster.dat
 532 %%DATADIR%%/test/cluster.key
 533 %%DATADIR%%/test/cluster.log
 534 %%DATADIR%%/test/cluster.run
 535 %%DATADIR%%/test/cluster.xyz
 536 %%DATADIR%%/test/crambin.key
 537 %%DATADIR%%/test/crambin.log
 538 %%DATADIR%%/test/crambin.pdb
 539 %%DATADIR%%/test/crambin.run
 540 %%DATADIR%%/test/cyclohex.boat
 541 %%DATADIR%%/test/cyclohex.chair
 542 %%DATADIR%%/test/cyclohex.key
 543 %%DATADIR%%/test/cyclohex.log
 544 %%DATADIR%%/test/cyclohex.run
 545 %%DATADIR%%/test/dhfr.dyn
 546 %%DATADIR%%/test/dhfr.key
 547 %%DATADIR%%/test/dhfr.log
 548 %%DATADIR%%/test/dhfr.run
 549 %%DATADIR%%/test/dhfr.xyz
 550 %%DATADIR%%/test/dialanine.key
 551 %%DATADIR%%/test/dialanine.log
 552 %%DATADIR%%/test/dialanine.run
 553 %%DATADIR%%/test/dialanine.xyz
 554 %%DATADIR%%/test/enkephalin.dat
 555 %%DATADIR%%/test/enkephalin.key
 556 %%DATADIR%%/test/enkephalin.log
 557 %%DATADIR%%/test/enkephalin.run
 558 %%DATADIR%%/test/ethanol.000
 559 %%DATADIR%%/test/ethanol.020
 560 %%DATADIR%%/test/ethanol.040
 561 %%DATADIR%%/test/ethanol.060
 562 %%DATADIR%%/test/ethanol.080
 563 %%DATADIR%%/test/ethanol.100
 564 %%DATADIR%%/test/ethanol.120
 565 %%DATADIR%%/test/ethanol.140
 566 %%DATADIR%%/test/ethanol.160
 567 %%DATADIR%%/test/ethanol.180
 568 %%DATADIR%%/test/ethanol.dat
 569 %%DATADIR%%/test/ethanol.key
 570 %%DATADIR%%/test/ethanol.log
 571 %%DATADIR%%/test/ethanol.run
 572 %%DATADIR%%/test/ethanol.xyz
 573 %%DATADIR%%/test/formamide.cell
 574 %%DATADIR%%/test/formamide.dat
 575 %%DATADIR%%/test/formamide.key
 576 %%DATADIR%%/test/formamide.log
 577 %%DATADIR%%/test/formamide.run
 578 %%DATADIR%%/test/gpcr.blk
 579 %%DATADIR%%/test/gpcr.key
 580 %%DATADIR%%/test/gpcr.log
 581 %%DATADIR%%/test/gpcr.run
 582 %%DATADIR%%/test/gpcr.xyz
 583 %%DATADIR%%/test/helix.1st
 584 %%DATADIR%%/test/helix.key
 585 %%DATADIR%%/test/helix.log
 586 %%DATADIR%%/test/helix.run
 587 %%DATADIR%%/test/ice.key
 588 %%DATADIR%%/test/ice.log
 589 %%DATADIR%%/test/ice.run
 590 %%DATADIR%%/test/ice.xyz
 591 %%DATADIR%%/test/ifabp.dat
 592 %%DATADIR%%/test/ifabp.key
 593 %%DATADIR%%/test/ifabp.log
 594 %%DATADIR%%/test/ifabp.run
 595 %%DATADIR%%/test/ifabp.xyz
 596 %%DATADIR%%/test/salt.cell
 597 %%DATADIR%%/test/salt.key
 598 %%DATADIR%%/test/salt.log
 599 %%DATADIR%%/test/salt.run
 600 %%DATADIR%%/test/tetraala.dat
 601 %%DATADIR%%/test/tetraala.key
 602 %%DATADIR%%/test/tetraala.log
 603 %%DATADIR%%/test/tetraala.run
 604 %%DATADIR%%/test/water.key
 605 %%DATADIR%%/test/water.log
 606 %%DATADIR%%/test/water.pot
 607 %%DATADIR%%/test/water.run
 608 %%DATADIR%%/test/water.xyz
 609 %%DATADIR%%/tinker.txt
 610 @dirrm %%DATADIR%%/test
 611 @dirrm %%DATADIR%%/params
 612 @dirrm %%DATADIR%%/bench
 613 @dirrm %%DATADIR%%
 614 %%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%
 615 %%PORTDOCS%%@dirrm %%DOCSDIR%%