taca [Tue, 21 Sep 2010 03:05:27 +0000 (03:05 +0000)]
* Fix PLIST when "ldap" is enabled in PKG_OPTIONS.
* Install README.LDAP when "ldap" is enabled in PKG_OPTIONS.
* Fix build problem when "kerberos" is enabled in PKG_OPTIONS.
Bump PKGREVISION since default PLIST has changed.
obache [Tue, 21 Sep 2010 02:34:12 +0000 (02:34 +0000)]
Remove -elc and -info archive from DISTFILES.
Noticed by Matthias Buelow via PR#31294.
Formerly, source part of xemacs is in no-prefix archive.
But now, it is in -src archive, and no-prefix archive contains all of them.
obache [Tue, 21 Sep 2010 01:16:28 +0000 (01:16 +0000)]
oss module will be installed conditionally.
PR#43889 should be fixed.
mrg [Mon, 20 Sep 2010 23:01:25 +0000 (23:01 +0000)]
update to bozohttpd
20100920. changes include:
o use scandir() with alphasort() for sorted directory lists, from moof
o fix a serious error in vhost handling; "Host:.." would allow access to
the next level directory from the virtual root directory, from seanb
o fix some various non standard compile time errors, from rudolf
o fix dynamic CGI content maps, from rudolf
wiz [Mon, 20 Sep 2010 21:29:27 +0000 (21:29 +0000)]
Updated audio/amarok to 2.3.2
wiz [Mon, 20 Sep 2010 21:29:15 +0000 (21:29 +0000)]
Update to 2.3.2:
VERSION 2.3.2
FEATURES:
CHANGES:
* Bumped libMTP dependency to version 1.0.0.
* Improved response of current track and albums applet on data updates.
* Use system date/time format for default name when saving user playlists.
BUGFIXES:
* Fixed incorrect size of the VideoClip applet. (BR 247097)
* Comments embedded in files that contained newlines or tabs could be
skipped entirely. (BR 223502)
* The equalizer dialog did not discard changes when clicking "Cancel".
Patch by Anton Gritsay <anton@angri.ru>. (BR 242730)
* The Last.fm service did not work without KWallet. (BR 235861)
* Show actual KDE version in the "About Amarok" dialog, instead of the
version used at compile time.
* Fixed a crash when trying to save a playlist to a file where the format
of the playlist was unknown. (BR 246168)
* Also use podcast channel image for downloaded episodes. (BR 229391)
* Collection directories that were symlinks could end up storing the wrong
absolute path, causing those files to be removed during incremental
scans.
* Fixed playlist tooltips not showing up, even when enabled in the playlist
layout (BR 249086)
* Fixed potential crashes related to Applet loading. (BR 246756)
* Fixed possible crash in Labels Applet when playing new track. (BR 248538)
* Fixed incorrect layout of applets on startup.
* Fixed Collection Browser not properly updating after a full rescan,
necessitating Amarok to be closed and reopened. Fixes various bugs.
(BR 172542)
* Fixed cover found dialog closing when download failed or is cancelled.
* Fixed failure when fetching cddb info for audio CDs in localized Amarok.
* Fixed expanding items in collection browser by double-click, in
double-click mode.
* Fixed crash when adding new folders repeatedly in podcast/saved playlist
browsers.
* Fixed context menu actions acting on wrong indices in the playlist
browser.
* Fixed incorrect text about "rpath" argument to collection scanner.
(BR 236076)
* Fixed emission of MPRIS StatusChange signal when switching into or out
of random mode.
VERSION 2.3.2-Beta 1
FEATURES:
* Podcasts can now be filtered on provider and grouped in folders. (BR 219519)
* Amarok 1.4 Database Importer: added support for importing labels.
Thanks to Matěj Laitl for the patch. (BR 218996)
* Shortcuts: Added "Replay current track" shortcut. (BR 217081)
* Edit filter dialog: added "added" and "last played" date filters.
* File browser: added forward and back buttons for accessing navigate history.
* Organize Dialog: added a way to save multiple file formats as presets. (BR 122672)
* Filtering: added default presets to the drop down menu of the collection
search widget.
* Filtering: track format can now be used as filter keyword in the
collection browser, e.g. "format:flac".
* Filtering: track file size can now be used as filter keyword in the
collection browser, e.g. "filesize:<12" for tracks under 12Mb;
"filesize:25" for tracks that are between 25 and 26Mb.
* Filtering: tracks that were added to the collection since/before a
certain time can now be filtered using, e.g. "added:<1w".
* Filtering: added ability to filter last played date in the collection
browser, e.g. "played:<3d".
CHANGES:
* Let scripts access bpm property of tracks (read-only). (BR 245257)
* Remote Meta+P global shortcut to avoid future problems with new
keyboard drivers in notebooks. (BR 235204)
* Fix size of Slim toolbar time labels. Thanks to Tijl Coosemans for the patch.
* Amarok 1.4 Database Importer: only import tracks that actually belong in the
collection. Thanks to Matěj Laitl for the patch. (BR 218999)
* Refresh the albums context applet when the collection is updated.
* Don't allow the last visible playlist source in User Playlists to be hidden.
* "Play Media" dialog now remembers the last used directory. (BR 231092)
* Organize Dialog: tweaked the layout to fit better on smaller resolutions (BR 238000)
* Filtering: added year suffix for date filters in the collection browser.
* Last.fm features that require user authentication are now disabled
by default.
* Ignore "DJ" prefix when sorting in collection browser. (BR 181955)
Patch by Richard Longland <rlongland@hotmail.com>.
BUGFIXES:
* Tweaked fuzzy numerical comparisons in the APG. (BR 242281)
* Finally don't truncate the "Label:" label in TagDialog. (BR 235957)
* Fix crash when right clicking on children of "No labels". NoLabel item is
now a Data item. (BR 243825)
* Fix regression in Dynamic Collections. For files that were scanned when
Dynamic Collections wasn't working, you will need to rescan them to get
them associated with the proper device.
* Fix crash on exit with newer KDE versions. Patch by Martin Blumenstingl and Felix
Geyer. (BR 245513)
* Fixed playlist bottom toolbar getting to tall when using "Text only"
button style. (BR 228390)
* Fixed Amarok layout saving when minized to tray. (BR 244583)
* Make "No other participants" in the events applet translatable.
Patch by Jan Janssen. (BR 235311)
* Fixed track number on DAAP shares. Patch by Silvio Frischknecht. (BR 235030)
* Fixed filtering by rating in the playlist. (BR 240293)
* The scripts categories are now translatable. (BR 240563)
* Fixed Amarok 1.4 Database Importer not importing statistics and lyrics of
tracks that are not yet in database. Thanks to Matěj Laitl for the patch.
(see comments on BR 218996)
* Fixed always playing first track when adding tracks to empty playlist with
random mode on. Patch by Anton Gritsay <anton@angri.ru> (BR 240452)
* Directories that were once part of the collection but not anymore may not
have been properly removed, leading to files outside the collection being
scanned. (BR 243532)
* Fixed "genre" and other playlist groupings not working. (BR 243344)
* Removed track progress effect on TrayIcon as it caused several problems
(also caused by a bogus implementation of the KSNI class)
(BR 233506, BR 240463, BR 231539, BR 232578, BR 232312).
* Fixed track name in main window title incorrectly changing when editing
tag info for another track. Thanks to Anton Gritsay <anton@angri.ru> for
the patch (BR 220521)
* Splitted desktop so mime types can be allocated in a better way
(BR 242292).
* Fixed some tracks not being scanned when they had corrupted MusicBrainz
IDs. Thanks to Matěj Laitl <matej@laitl.cz> for the patch. (BR 236227)
* Fixed crash when navigating using "Places" in the file browser. (BR 240338)
* Fixed error dialog popup if the stored directory is no longer accessible
when using the file browser. (BR 234286)
* Single clicking a file in the file browser now selects it instead of
appending to the playlist by default in single-click mode. (BR 233171)
* Fixed resizing and eliding issues with the file browser breadcrumbs.
(BR 231366 comment #5)
* Drop file icons in file browser breadcrumbs. (BR 231366)
* Fixed keyboard navigation in file browser. (BR 240668)
Patch thanks to Hannes Koller.
* Fixed dropping files to playlist from Konqueror. (BR 235722)
* Fixed keyboard shortcuts of actions from scripts lost after restart.
Thanks to Martin Blumenstingl <darklight.xdarklight@googlemail.com>.
(BR 223165)
* Fixed tracks not changing for "stop after this track" action. (BR 231209)
* Cleaned up some tooltips/what's this strings in the Organize dialog
to make it easier to read and, hopefully, understand. (BR 237857)
* Fixed organize dialog's handling of the year tag. If there is no year
then the %year token should be an empty string.(BR 237834)
* The "Ignore 'The'" option in the organize files dialog is now case
insensitive. (BR 237831)
* Fixed odd header name when showing "places" in the file browser.
(BR 238518)
* Filenames with dots (.) and other special RegEx characters will now be
parsed correctly when guessing tags from a filename. (BR 225743)
* Align track details dialog's labels to the right as per KDE4's HIG.
(BR 234555)
* The last.fm service will now only open the wallet on startup if the user
has enabled features that require authentication. (BR 230098)
* Correctly load the list of labels in tag dialog. (BR 238737)
Patch by Daniel Faust <hessijames@gmail.com>.
* Cover manager: fixed crash if closed shortly after opening. (BR 235796)
* Fixed Last.fm service browser not updating its view if it's open on
startup. (BR 231044)
* Fixed clicking on browser categories not honoring mouse settings. (BR 226533)
* Fixed usability issue with regards to context menu item order when right
clicking in the playlist widget. (BR 198650)
obache [Mon, 20 Sep 2010 11:04:44 +0000 (11:04 +0000)]
This package have nothing to buildlink3.
obache [Mon, 20 Sep 2010 10:57:06 +0000 (10:57 +0000)]
No need to buildlink with py-ephem, switched to simple DEPENDS
obache [Mon, 20 Sep 2010 09:52:30 +0000 (09:52 +0000)]
Updated math/py-ephem to 3.7.3.4
obache [Mon, 20 Sep 2010 09:52:14 +0000 (09:52 +0000)]
Update py-ephem to 3.7.3.4.
Based on PR#43737 by Kamel Derouiche.
remove RESTRICTION, because COPYING file said GPL or LGPL, nothing for others.
PyEphem CHANGELOG
=================
Version 3.7.3.4 (2009 April 30)
-------------------------------
- Added a new ``next_pass()`` method to ``Observer`` that searches for
when a satellite next rises, culminates, and sets.
- Added a ``compute_pressure()`` method to ``Observer`` which computes
the standard atmospheric pressure at the observer's current elevation.
This function now gets called automatically on new ``city()`` objects
before they are returned to the user.
- Corrected the altitude of San Francisco as returned by ``city()``.
- Improved the copyright message so that two more authors are credited.
Version 3.7.3.3 (2008 October 3)
--------------------------------
- Added ``cmsI`` and ``cmsII`` attributes to ``Jupiter`` to provide the
central meridian longitude in both System I and System II.
- **Bugfix**: Saturn was returning the wrong values for its earthward
and sunward angle tilt.
Version 3.7.3.2 (2008 July 2)
-----------------------------
- **Bugfix**: the rising and setting functions, if called repeatedly,
would sometimes get hung up on a single answer which they would return
over and over again instead of progressing to the next rising or
setting. They should now always progress instead of getting stuck.
Version 3.7.3.1 (2008 July 1)
-----------------------------
- **Bugfix**: the rising and setting functions were attempting to
achieve such high precision that users sometimes found circumstances
under which they would not complete at all! They now stop and return
an answer once they are withing a half-second of the real time of
rising, transit, or setting, which solves the problem without damaging
the quality of the results when tested against the Naval Observatory.
- Upgraded to the libastro from XEphem 3.7.3.
Version 3.7.2.4 (2008 June 12)
------------------------------
- **Incompatible Change**: After feedback from users, I have changed
the ``Observer`` methods which find risings, settings, and transits,
so that they do not change their Observer's ``.date`` attribute. So
the sequence:
.. code-block:: python
r1 = boston.next_rising(mars)
r2 = boston.next_rising(mars)
now computes the same value twice! If you want a series of calls to
each begin when the other left off, you can use the ``start=``
parameter described in the next item:
.. code-block:: python
r1 = boston.next_rising(mars)
r2 = boston.next_rising(mars, start=r1)
- Added an optional ``start=`` argument to the rising, setting, and
transit ``Observer`` functions, that tells them from which date and
time to begin their search.
- **Bugfix**: Rewrote planetary moon routines so that moons of Mars,
Jupiter, Saturn, and Uranus now return appropriate data for years
1999-2020. (Each moon had been returning the unmodified position of
its planet, because I was unsure whether I could distribute the moon
data with PyEphem.)
- You can no longer create arbitrary attributes on an ``Observer``, to
prevent users from accidentially saying things like
``here.longitude`` or ``here.lon`` when they mean ``here.long``.
Create your own subclass of ``Observer`` if you need the power to
set your own attributes.
- The ephem module now provides a ``__version__`` symbol.
- Added test suite that tests planet and planet moon positions
against JPL ephemeris data (needs more work).
Version 3.7.2.3 (2008 January 8)
--------------------------------
- Three new classes ``Equatorial``, ``Ecliptic``, and ``Galactic``
allow coordinates to be transformed between the three systems
(ability to transform coordinates was requested by Aaron Parsons).
- Added constants for popular epochs ``B1900``, ``B1950``, and
``J2000``.
- Added named functions for every solstice and equinox (before, only
the vernal equinox could be asked for specifically).
- Product tests have been moved inside of the ``ephem`` module itself,
and can now be invoked simply by running:
.. code-block:: bash
$ python setup.py test
- **Bugfix**: ``Angle()`` can no longer be directly instantiated.
- **Bugfix**: San Francisco had the wrong coordinates in the cities
database (pointed out by Randolph Bentson).
Version 3.7.2.2 (2007 December 9)
---------------------------------
- The phases of the moon can now be determined through the functions
``next_new_moon()``, ``next_full_moon()``, ``previous_new_moon()``,
et cetera.
- Added a modest database of world cities; the ``city()`` function
returns a new Observer on each call:
.. code-block:: python
observer = ephem.city('Boston')
- Using the old ``rise``, ``set``, and ``transit`` attributes on
``Body`` objects now causes a deprecation warning.
- **Bugfix**: the last release of PyEphem omitted the constants
``meters_per_au``, ``earth_radius``, ``moon_radius``, and
``sun_radius``; the constant ``c`` (the speed of light) is also now
available.
Version 3.7.2.1 (2007 October 1)
--------------------------------
- Functions now exist to find equinoxes and solstices.
- Bodies now cleanly offer three different versions of their
position, rather than making the user remember obscure rules for
having each of these three values computed:
* Astrometric geocetric right ascension and declination
* Apparent geocentric right ascension and declination
* Apparent topocentric right ascension and declination
- Bodies can now find their next or previous times of transit,
anti-transit, rising, and setting.
- A ``localtime()`` function can convert PyEphem ``Date`` objects to
local time.
- Now ``ephem.angle`` instances can survive unary ``+`` and ``-``
without getting changed into plain floats.
- The ``elev`` Observer attribute has been renamed to ``elevation``.
- Observers now display useful information when printed.
- Added a much more extensive test suite, which, among other things,
now compares results with the United States Naval Observatory,
insisting upon arcsecond agreement.
- **Bugfix**: When a fixed body is repeatedly precessed to different
dates, its original position will no longer accumulate error.
Version 3.7.2a (2007 June)
--------------------------
- Upgraded to the libastro from XEphem 3.7.2.
- Should now compile under Windows!
- **Bugfix**: rewrote date-and-time parsing to avoid the use of
``sscanf()``, which was breaking under Windows and requiring the
insertion of a leading space to succeed.
- Improved the error returned when a date string cannot be parsed,
so that it now quotes the objectionable string (so you can tell
which of several date strings on the same line gave an error!).
obache [Mon, 20 Sep 2010 08:23:48 +0000 (08:23 +0000)]
remove unused patch, should be removed at last update.
jakllsch [Mon, 20 Sep 2010 01:16:36 +0000 (01:16 +0000)]
Updated graphics/xzgv to 0.9.1
jakllsch [Mon, 20 Sep 2010 01:16:18 +0000 (01:16 +0000)]
Update xzgv to 0.9.1.
Approved (but not reviewed) by shattered@.
Upstream "changelog":
This release fixes some important bugs and brings the documentation
more up to date.
minskim [Sun, 19 Sep 2010 23:59:30 +0000 (23:59 +0000)]
Note update of tex-dvips{,-doc}.
minskim [Sun, 19 Sep 2010 23:58:41 +0000 (23:58 +0000)]
Update tex-dvips{,-doc} to 2010.
Changes:
- Sync font map files with tex-pdftex.
minskim [Sun, 19 Sep 2010 23:24:30 +0000 (23:24 +0000)]
Note update of tex-pdftex-def.
minskim [Sun, 19 Sep 2010 23:24:03 +0000 (23:24 +0000)]
Update tex-pdftex-def to 0.05b.
Changes:
2010/03/11 v0.04o (HO)
* Ensure that \undefined is undefined during loading of
ConTeXt files.
2010/03/12 v0.04p (HO)
* \undefined is also undefined during conversion of MPS.
2010/04/14 v0.04q (HO)
* Optimizations for rotating and scaling:
* remove unnecessary identity transformations
* numbers are normalized
2010/04/15 v0.04r (HO)
* Fix for scale values without integer part.
2010/09/09 v0.05a (HO)
* Option `pagebox' added for specifying the pdf page box
of the included image. Values are `mediabox', `cropbox',
`bleedbox', `trimbox' and `artbox'. Default is `cropbox'. (MS/HO)
* Option `interpolate' added for bitmaps, see PDF specification.
Values are `true' or `false', default is `false'.
* Option `decodearray' added for bitmaps, see PDF specification,
key /Decode of image dictionaries. The value for option
`decodearray' is the value for /Decode without `[' and ']'.
* Option `maskarray' added for bitmaps, see PDF specification,
key /Mask of image dictionaries with array as value.
The value of `maskarray' is the array value for /Mask
without `[' and ']'.
* Option `intent' added for the rendering intent of bitmap
images, see PDF specification, key /Intent of image
dictionaries. The value is a name without a leading slash,
the standard names of the PDF specification:
`AbsoluteColorimetric', `RelativeColorimetric',
`Saturation', `Perceptual'.
* Options `ocobjnum' and `ocobjref' are hooks for those who wants
to work with optional content. The options can be used for both
bitmap and PDF images and are unsupported for MPS.
The optional content dictionary is given by an external
object. Option `ocobjnum' expects the number of that object
(e.g. \pdflastobj). It's a positive integer (greater than zero).
Option `ocobjref' takes the full object reference
(positive integer, followed by ` 0 R' in case of pdfTeX).
Other drivers might support `ocobjref' as well, in case of
PostScript/pdfmark drivers, the object is usually referenced by
a name in curly braces.
* Tiff support removed for driver versions between 1.10a and 1.30.
2010/09/14 v0.05b (HO)
* Fix, \pagecolor got broken accidentally (in v0.05a).
minskim [Sun, 19 Sep 2010 23:20:33 +0000 (23:20 +0000)]
Update DISTFILES of tex-tools{,-doc} for TeX Live 2010.
minskim [Sun, 19 Sep 2010 23:18:08 +0000 (23:18 +0000)]
Note update of tex-memoir{,-doc}.
minskim [Sun, 19 Sep 2010 23:17:17 +0000 (23:17 +0000)]
Update tex-memoir{,-doc} to 3.6fpl6.0g.
Changes:
-- a typo fix memoir in memoirs float handling got lost, this brings it
back in line
-- changed \parnopar to make its changes inside a group
-- some clearifications in the manual
- fixed typo introduced in v1.14
(special thanks to Ian D. Leroux and meho_r on ctt for reporting this)
-- added \precistocformat, default \noindent, thus the toc precis text
is no longer indented by default.
-- Fixed some typos in the manual and in the class
-- reorganized the manner by which we handle the memoir user
manual. This enables us to add reversion numbers and dates to the
start of each chapter of the manual. Please note that these
revision numbers do not appear if one attempts to compile
memman.tex as it relies on a modified (and thus private) version of
svn-multi and also relies on splitting memman.tex into separate
files.
-- If the 'article' class option is in effect we now use the plain
page style by default instead of headings.
-- Brought memoir sections back in line with hyperref. Now a hyperlink
to a section should end up above the section tilte, instead of below.
-- reversioned memoir to version 3.6. The version number was tending
towards the golden ration, but apparently this numeric value is
not widely known.
-- fixed \marginparmargin{left} in twoside mode
-- fixed a race condition in memhfixc
minskim [Sun, 19 Sep 2010 23:10:02 +0000 (23:10 +0000)]
Note update of tex-hyperref{,-doc}.
minskim [Sun, 19 Sep 2010 23:09:00 +0000 (23:09 +0000)]
Update tex-hyperref{,-doc} to 6.81p.
Changes:
* Sanitizing (babel shorthands) of anchor names in
\hyper@anchor and \hyper@anchorstart.
* Broken option `pdfborder' fixed (since 6.81n).
* New option `driverfallback'. It takes a driver option for
the case that a driver is not given and cannot be autodetected.
(Feature request by Markus Kohm.)
* Unused option `hyperref' removed.
* Driver options are now `void' options that do not accept any values.
* New option `pdfremotestartview'.
* \href with new optional argument with
keys `page' and `pdfremotestartview', `pdfnewwindow', `ismap',
`nextactionraw'.
* Fix for urls in \href: Prefix 'file:' is not added.
* Fix spacefactor corrections of 6.81i for math mode.
* Fixing GoToR actions if \href contains `file:///' or
`file://localhost/'.
* PDF forms: Missing JavaScript actions added for check boxes,
push, submit and reset buttons.
* PDF forms: Warnings are given, if HTML field options are used.
* \Hy@EveryPageAnchor fixed to avoid Overfull \hbox warnings
with some drivers.
* Various drivers: Destinations made transparent for \spacefactor.
* Various drivers: Links made transparent for \spacefactor.
* Various drivers: Fixes for option `raiselinks' without color.
* Fix for clash with package `varioref', that redefines
\refstepcounter with loss of hyperref's additions.
* Additions for README.
* backref 1.36: Typo in warning fixed.
* pdfmark: Disabling of \escapechar is removed during reading
the .out file. With package xkeyval the \pdfmark causes
lots of character `2' in the output.
* kvsetkeys: \setkeys is replaced by \kvsetkeys.
* Beautifying error text of utf8x.def of \utf@viii@undeferr.
* pdfmark.def: Avoid \leavevmode and \hbox of \pdf@rect
for destinations with empty target area. It fixes spacing
in situations like "\section{A}\hypertarget{foobar}{}\section{B}".
(Bug detected by Thomas Beuthe.)
* Real epsilon for \eTeX and \LaTeXe in Unicode bookmarks.
* Fix for russian. (Bug found by Victor Kozyakin.)
* Fix for funny \@alph and \@Alph definitions for use
in anchor names.
* \@fnsymbol uses replacement in anchor names.
* Bookmarks: memoir's \booknumberline supported.
minskim [Sun, 19 Sep 2010 23:01:04 +0000 (23:01 +0000)]
Note update of tex-ifxetex{,-doc}.
minskim [Sun, 19 Sep 2010 23:00:24 +0000 (23:00 +0000)]
Update tex-ifxetex{,-doc} to 0.6.
Changes:
- Added more \expandafter\expandafter\expandafter.
minskim [Sun, 19 Sep 2010 22:53:01 +0000 (22:53 +0000)]
Update tex-tetex{,-doc} to r19769. No changes to installed files.
tron [Sun, 19 Sep 2010 22:23:32 +0000 (22:23 +0000)]
Fix build under Mac OS X with a small change discussed on the
"mplayer-dev-eng" mailing list.
abs [Sun, 19 Sep 2010 22:08:22 +0000 (22:08 +0000)]
Include xcb-util/buildlink3.mk for x11 to ensure globalhotkeys is built - bump pkgrevision
minskim [Sun, 19 Sep 2010 20:46:12 +0000 (20:46 +0000)]
Update DISTFILES of tex-german{,-doc} for TeX Live 2010.
joerg [Sun, 19 Sep 2010 17:48:56 +0000 (17:48 +0000)]
Allow both, new and old, font locations for now. Bump revision.
sno [Sun, 19 Sep 2010 16:13:06 +0000 (16:13 +0000)]
Updated devel/java-subversion to 1.6.12
sno [Sun, 19 Sep 2010 16:12:49 +0000 (16:12 +0000)]
Updated devel/p5-subversion to 1.6.12
sno [Sun, 19 Sep 2010 16:12:28 +0000 (16:12 +0000)]
Updated devel/py-subversion to 1.6.12
sno [Sun, 19 Sep 2010 16:12:08 +0000 (16:12 +0000)]
Updated devel/ruby-subversion to 1.6.12
sno [Sun, 19 Sep 2010 16:11:54 +0000 (16:11 +0000)]
Updated www/ap2-subversion to 1.6.12
sno [Sun, 19 Sep 2010 16:11:38 +0000 (16:11 +0000)]
Updated devel/subversion-base to 1.6.12
sno [Sun, 19 Sep 2010 16:11:21 +0000 (16:11 +0000)]
Updated devel/subversion to 1.6.12
sno [Sun, 19 Sep 2010 16:10:47 +0000 (16:10 +0000)]
Updating subversion from 1.6.9nb1 to 1.6.12
Upstream changes:
Version 1.6.12
(21 Jun 2010, from /branches/1.6.x)
http://svn.apache.org/repos/asf/subversion/tags/1.6.12
User-visible changes:
* further improvements for issue #3242
* allow deletion of uris which need character escaping (issue #3636)
* fix errors with 'svn mkdir --parents' (issue #3649)
* update address to which crash reports are sent (r901304)
* check for server certificate revocation on Windows (r898048)
* disable custom file mutexes on Windows (r879902, -16)
* fix handling of peg revision'd copy targets (issue #3651)
* more improvements to 'svn merge --reintegrate' (r935631)
* allow copying of broken symlinks (issue #3303)
* improve rep-sharing performance on high-concurrency repos (issue #3506)
* fixed: added subtrees with mergeinfo break reintegrate (issue #3654)
* fixed: assertion triggered by tree-conflicted externals (issue #3469)
Developer-visible changes:
* give windows devs more flexibility with sqlite versions (r944635)
* allow the pack tests to work with low file descriptor limits (r937610)
* improve exception handling on Windows Vista and 7 (r878447, -910, -916)
Version 1.6.11
(19 Apr 2010, from /branches/1.6.x)
http://svn.apache.org/repos/asf/subversion/tags/1.6.11
User-visible changes:
* fix for repositories mounted via NFS (issue #3501)
* enable TCP keep-alives in svnserve (r880552)
* tighten restrictions on revprops for 'svnadmin verify' (r904594)
* make ra_serf give better out-of-date information (issue #3561)
* improve error message upon connection failure with svn+ssh:// (r922516)
* allow 'svn log' on an uncommitted copy/move destination (r901752)
* make 'svnadmin hotcopy' copy the fsfs config file (r905303)
* mergeinfo improvements with non-inheritable mergeinfo (issue #3573)
* make mergeinfo queries not require access to the repo root (issue #3242)
* update URLs to refer the the new apache.org repository (r904301, -94)
* update relative externals during a switch (issue #3390)
* fix 'merge --reintegrate' with self-referential mergeinfo (r892050, -85)
* improve wc-ng working copy detection (r929382)
* improve handling of mergeinfo when using serf (r880461)
* fixed: 'svnlook plist --revprop' with '-t TXN_NAME' (r917640, -8211)
* fixed: file external from URL cannot overwrite existing item (issue #3552)
* fixed: potential memory error in 'svn status' (r923674, -9)
* fixed: merge records mergeinfo from natural history gaps (issue #3432)
* fixed: theoretical possibility of DB corruption (r926151, -67)
Developer-visible changes:
* disable checks for wc-ng working copies when running the test suite
* on Windows, don't ignore move operation error codes (r896915)
* more precise reporting of errors occuring with sqlite init (r927323, -8)
* ensure rangelist APIs are commutative (r923389, -91)
Version 1.6.10
(Not released, see changes for 1.6.11.)
minskim [Sun, 19 Sep 2010 15:36:24 +0000 (15:36 +0000)]
Note PKGREVISION bump of web2c.
minskim [Sun, 19 Sep 2010 15:35:59 +0000 (15:35 +0000)]
- Override ptex's libtool. Noted by spz@.
- Use poppler instead of xpdf. Noted by drochner@.
wiz [Sun, 19 Sep 2010 15:33:22 +0000 (15:33 +0000)]
Updated x11/lablgtk to 2.14.2
wiz [Sun, 19 Sep 2010 15:33:10 +0000 (15:33 +0000)]
Update to 2.14.2:
In Lablgtk-2.14.2:
2010.09.09 [Jacques]
* add GtkCurve (but it is deprecated since 2.20)
2010.08.16 [Jacques]
* rename g_value_{get,set}_variant, as the name is used by recent
versions of glib (reported by Florent Monnier)
2010.07.25 [Jacques]
* add changed signal to cell_renderer_combo (reported by Dmitry Bely)
2010.07.23 [Jacques]
* copy GtkTreePath arguments in callbacks, as reported by Benjamin.
2010.06.25 [Jacques]
* remove gtkInit.cmo from gdk_pixbuf_mlsource, no need to
initialize Gtk as Gobject is sufficient
* protect GtkThread callbacks against exceptions, and provide a
function to process messages inside a different main loop.
* add -nothinit option to lablgtk2, since Quartz cannot run the main
loop in a different thread (one should just call GtkThread.main).
See dialog-thread.ml for an example.
2010.06.08 [Jacques]
* correct interfaces due to the fixing of an unsoundness bug in ocaml 3.12
(cf. http://caml.inria.fr/mantis/view.php?id=4824)
wiz [Sun, 19 Sep 2010 15:06:28 +0000 (15:06 +0000)]
Updated graphics/sane-backends to 1.0.21
wiz [Sun, 19 Sep 2010 15:06:18 +0000 (15:06 +0000)]
Update to 1.0.21:
New with 1.0.21, released 2010-04-25:
* New backends: kodak (Kodak i18xx), kvs1025 (Panasonic KV-S10xx),
p5 (Primax PagePartner)
* 224 more scanner models supported.
* Many backends updated.
* Improved compilation on uncommon platforms.
* More consistent option naming.
* Scanimage no longer writes image to tty.
* Modern translation infrastructure.
* Improved saned network daemon.
* Internal SCSI, USB, threading, TCP & UDP code updates.
* Updated HAL and udev support.
* New sanei_magic image processing library.
* Documentation updates.
* Bugfixes.
minskim [Sun, 19 Sep 2010 14:45:17 +0000 (14:45 +0000)]
Update tex-kpathsea{,-doc} to r19789. No changes to installed files.
minskim [Sun, 19 Sep 2010 14:37:01 +0000 (14:37 +0000)]
Note update of tex-euenc{,-doc}.
spz [Sun, 19 Sep 2010 14:35:56 +0000 (14:35 +0000)]
note updates of apache-tomcat6 and rt3
minskim [Sun, 19 Sep 2010 14:35:48 +0000 (14:35 +0000)]
Update tex-euenc{,-doc} to 0.1h.
Changes:
- For LuaTeX, a subset of xunicode incorporated it into the EU2 encoding.
spz [Sun, 19 Sep 2010 14:32:04 +0000 (14:32 +0000)]
Update of apache-tomcat to version 6.0.29
(and a little Makefile cosmetics)
fixes two of the currently known security issues
Upstream changelog:
Tomcat 6.0.29 (jfclere) released 2010-07-22
Catalina
add 48960: Add a new option to the SSI Servlet and SSI Filter to
allow the disabling of the exec command. This is now disabled
by default. Based on a patch by Yair Lenga. (markt)
fix 49551: Allow default context.xml location to be specified using
an absolute path. (markt)
fix 49598: When session is changed and the session cookie is
replaced, ensure that the new Set-Cookie header overwrites the
old Set-Cookie header. (markt)
fix Fix order when listing Webapp loader search URLs. (rjung)
add Add support for *.jar pattern in VirtualWebappLoader. (kkolinko)
Tomcat 6.0.28 (jfclere) released 2010-07-09
Catalina
fix Arrange filter logic. (jfclere)
fix 49230: Enhance JRE leak prevention listener with protection for
the keep-alive thread started by sun.net.www.http.HttpClient.
Patch provided by Rob Kooper. (markt)
fix 49351: Fix possible NPe when embedding and no name is specified
for the Service. (markt)
fix 49424: Avoid NPE if client provides no data with a chunked
POST request. (markt)
fix 49414: Differentiate between request threads and application
created threads when warning about still running threads when
an application stops. (markt)
fix 49443: Use remoteIpHeader rather than remoteIPHeader
consistently. (markt)
add Add property searchExternalFirst to WebappLoader. If set,
the external repositories will be searched before the WEB-INF
ones. (rjung)
Cluster
fix 49445: When session ID is changed after authentication, ensure
the DeltaManager replicates the change in ID to the other nodes
in the cluster. (kfujino)
Webapps
fix 49213: Grant permissions required by manager application when
running under a security manager. (markt/kkolinko)
fix 49436: Correct documented default for readonly attribute of
the UserDatabase component. (markt)
Tomcat 6.0.27 (jfclere) not released
General
update Update DBCP to 1.3. (markt)
Catalina
fix Fix CVE-2010-1157. Prevent possible disclosure of host name
or IP address via the HTTP WWW-Authenticate header when using
BASIC or DIGEST authentication. (markt)
add Include context name when reporting memory leaks to aid root
cause identification. (markt)
fix Improve exception handling on session de-serialization to
assist in identifying the root cause of 48007. (kkolinko)
add 48379: Make session cookie name, domain and path configurable
per context. (markt)
fix 48589: Make JNDIRealm easier to extend. Based on a patch by
Candid Dauth. (markt/kkolinko)
fix 48629: Allow user names as well as DNs to be used with the
nested role search. Add roleNested to the documentation.
Patch provided by Felix Schumacher. (markt)
fix 48661: Make error page behavior consistent, regardless of how
the error page is defined. If a response has been committed,
always include the error page. (markt)
fix 48729: Return roles defined by both userRoleName and roleName
mechanisms. Patch provided by 'eric'. Also make user's role
list immutable.(markt)
fix 48760: Fix potential multi-threading issue in static resource
serving where multiple threads could try to use the the same
InputStream. (markt)
fix 48790: Fix thread safety issue in the count of the maximum
number of active session. (markt/kkolinko)
fix 48793: Make catalina.sh more robust to different return values
on different platforms. Patch provided by Thomas GL. (markt)
fix 48840: Swallow output (if any) from use of cd when determining
$CATALINA_HOME in catalina.sh and tool-wrapper.sh scripts.
Based on patch provided by mdietze. (markt/kkolinko)
fix 48895: Make clearing of ThreadLocals that are causing memory
leaks on web application stop, reload or undeploy configurable
since the process of clearing them is not thread-safe. (markt)
fix 48903: Fix deadlock in webapp class loader. (rjung)
fix 48971: Make stopping of leaking Timer threads optional and
disabled by default. (markt)
fix 48976: Document JAVA_ENDORSED_DIRS in start-up scripts.
Patch provided by Laurent Vaills. (markt)
fix 48983: Improve debug logging for situations when RemoteIpValve
is bypassed. Patch provided by Cyrille Le Clerc. (markt)
fix 49018: Fix processing of time argument in the Expire sessions
action in the Manager web application. (kkolinko)
fix 49116: If session is already invalid, expire session to prevent
memory leak. (kfujino)
fix 49158: Ensure only one session cookie is returned for a single
request. (markt/fhanik)
fix 49245: Fix session expiration check in cross-context requests.
(markt)
fix 49398: ByteChunk.indexOf(String, int, int, int) could not find
a string of length 1. (kkolinko)
fix Fix possible overflows when calculating session statistics.
(kkolinko)
add Log unexpected exceptions when providing access to web
application resources in ApplicationContext. (kkolinko)
fix Improve exception handling in CatalinaShutdownHook. (kkolinko)
add Expose properties of VirtualWebappLoader and WebappClassLoader
via JMX. (rjung)
Coyote
fix 48839: Correctly handle HTTP header folding in the NIO connector.
Patch suggested by Richa Baronia. (markt)
fix 48843: Prevent possible deadlock for worker allocation in
connectors. (kkolinko)
fix 48843: Fix handling of add queues in AprEndpoint.Poller and
AprEndpoint.Sendfile. Do not miss wakeups. (kkolinko)
add 48862: Add support for the backlog parameter to the AJP
connector. (pero/markt)
fix 48917: Correct name of mod_jk module in ApacheConfig.
Patch provided by Todd Hicks. (markt)
fix 49095: AprEndpoint did not wakeup acceptors during shutdown
when deferAccept option was enabled. Based on a patch provided
by Ruediger Pluem. (kkolinko)
add Use chunked encoding for http 1.1 requests with no
content-length (regardless of keep-alive) so client can
differentiate between complete and partial responses. (markt)
fix Correct the SSL session timeout attribute name so the code
agrees with the documentation. (markt)
add CoyotePrincipal now implements Serializable. (fhanik)
fix Enable the BIO AJP connector to run under a security manager.
(markt)
Jasper
fix 45015: Correct a regression in quote handling caused by the
re-factoring of attribute parsing. (markt)
fix 48701: Add a system property to allow disabling enforcement
of JSP.5.3. The specification recommends, but does not require,
this enforcement. (kkolinko)
fix 48737: Don't assume paths that start with /META-INF/... are
always in JARs. This is not true for some IDEs.
Patch provided by Fabrizio Giustina. (markt)
fix 49081: Correctly handle EL expressions of the form #${...}. (markt)
fix 49196: Avoid NullPointerException in PageContext.getErrorData()
if an error-handling JSP page is called directly. (markt)
Cluster
fix 48717: When a node joins a cluster and it receives all the
current sessions, ensure the sessionCreated event is fired
if the Manager is configured to replicate session events. (markt)
fix 48934: Previous fix to handle dropped connections incorrectly
permanently disabled session replication. (fhanik)
fix 49051: memberAlive is not called if member has not already
existed in membership. (kfujino)
fix 49151: Avoid ClassCastException in BackupManager#stop. (kfujino)
fix 49170: Do not send duplicated session. (kfujino)
fix Add missing messages and ensure cluster listeners log messages
to correct logger. (markt)
Webapps
add Use underscores instead of spaces in anchor names in Tomcat
documentation. (kkolinko)
add Add support for displaying the Spring Security user name
(if present) in the Manager application. (markt)
update Improve the ChatServlet Comet example (/examples/jsp/chat/).
(kkolinko)
Other
update Update to Commons Daemon 1.0.2. Use service launcher (procrun)
from the Commons Daemon release. Do not keep a copy of it in
our source tree. (mturk/kkolinko)
update Update to NSIS 2.46. (kkolinko)
fix 48990: Fix the skip.installer build property so if set, only
the Windows installer is skipped. (markt)
fix 49178: Provide in catalina.policy an example of additional
permissions that might be needed for code located in
$CATALINA_BASE/lib. (markt)
fix 49236: Do not use indexing when packing Tomcat JARs. (kkolinko)
fix Remove unused code from org.apache.tomcat.util.buf classes.
(kkolinko)
update Rearrange tomcat-juli.jar permissions and wrap long lines in
the conf/catalina.policy file, to make the text more readable
when cited in documentation. (kkolinko)
fix Do not evaluate the execute.installer property when building
a release. The skip.installer property is used instead. (kkolinko)
Tomcat 6.0.26 (jfclere) released 2010-03-11
Catalina
fix Close security hole in unreleased 6.0.25 by ensuring new find
leaks functionality is protected by a security constraint.
(kkolinko)
fix 48831: Improve logging shutdown behaviour. Use Catalina's
shutdown hook to shutdown JULI. This enables them to be shutdown
in the correct order. Do not shutdown global handlers several
times. (markt/kkolinko)
Coyote
fix 48584: Prevent the APR connector logging an error if the
acceptor fails during shutdown since this is expected. (mturk)
fix 48660: Using compression should not overwrite any Vary header
set by a web application. (markt)
Jasper
fix 48371: Ensure generated servlet mappings are inserted at the
correct location when using JspC and allow the option that
controls this to be configured on the command line.
Also allow the encoding of web.xml to be configured when using
JspC and deprecate some unused JspC methods. (markt/kkolinko)
fix 48498: Avoid ArrayIndexOutOfBoundsException triggered by a
Java 6/7 XML parser bug. (markt/kkolinko)
fix 48668: Additional fixes to ensure deferred syntax is handled
correctly. (kkolinko)
fix 48827: Correct a regression in the fix for 47977 that caused
an incorrect non-empty body error to be reported for valid
JSP documents. (markt)
Webapps
add Make changelog.xml be directly rendered as HTML by certain
browsers. (kkolinko)
add Add support for automated generation of TOC tables and for
links to svn revisions to tomcat-docs.xsl in documentation.
(kkolinko/fhanik)
add Move Manager application JSPs that are not intended to be
accessed directly under the WEB-INF directory. (kkolinko)
fix Improve the messages displayed by the find leaks diagnostic
in the Manager application. (kkolinko)
Other
fix Encode all property files using ascii escaped UTF-8. Also
fixes deployment problem when using French locale. (jfclere/rjung)
Tomcat 6.0.25 (jfclere) not released
Catalina
fix 48039: Return immediately if start() is called on an already
started StandardService. (markt)
fix 48109: Ensure InputStream is closed on error condition in web
application class loader. (markt)
fix 48179: Clean up dead code that was used to read tldCache file.
(kkolinko)
fix 48318: Handle case where WebDAV resource is in directory
listing but is not accessible. (markt)
add 48384: Add a per context xslt option for directory listings.
Make the fallback options work as described in the
documentation. (markt)
fix 48577: Filter URL when displaying missing included page. (markt)
fix 48612: Prevent exception on shutdown if the address attribute
is specified for a connector. (markt)
fix 48613: Further fixes to ensure APRLifecycleListener is only
used if defined in server.xml. (fhanik)
fix 48614: Correct JULI log file buffering so default behaviour
is no buffering. (fhanik)
fix 48625: Provide an option to exit if an error occurs during
the initialization phase. (fhanik)
fix 48645: Use specified encoding rather than null in calls to
RequestUtil.URLDecode(byte[] bytes, String enc) (markt)
fix 48653: Force request.secure and request.scheme to false and
http if the X-Forwarded-Proto header has the value http.
Patch provided by Cyrille Le Clerc. (markt)
fix 48678: Remove duplicate server field from
org.apache.catalina.startup.Catalina. (markt)
fix 48694: Remove potential deadlock in web application class
loader. (markt)
add 48716: Provide additional configuration options for JULI. (markt)
fix 48726: Prevent OOME when uploading large WAR files with the
deployer. Patch provided by adam. (markt)
add Improve memory leak protection by safely stopping threads
started via java.util.Timer that an application starts but
fails to stop and by clearing references retained due to the
use of java.util.ResourceBundle. (markt)
update Modify ThreadLocal memory leak detection to not report false
positives and to simplify implementation. (markt/kkolinko)
add Basic memory leak detection was added to the standard Host
implementation and exposed via JMX to detect memory leaks on
web application reload. (markt/kkolinko)
Coyote
update Update the native/APR library version bundled with Tomcat to
1.1.20. (kkolinko)
Jasper
add Add some debug logging to the compiler where exceptions were
previously swallowed. (markt)
fix 48170: Remove unnecessary synchronization that is causing
issues under load. (markt)
fix 48580: Prevent AccessControlException if first access is to
a JSP that uses a FunctionMapper. (markt)
fix 48582: Avoid NPE on background compilation failure. (markt)
fix 48616: Don't declare or synchronize scripting variables for
JSP fragments since they are scriptless. This is an alternative
fix for 42390 that avoids both the original problem and the
regression in the first fix. (kkolinko)
fix 48627: Fix regression in re-factored EL parsing. Keep literals
as literals and handle deferredSyntaxAllowedAsLiteral. (kkolinko)
fix 48668: When parsing JSPs only parse EL as EL if EL is enabled
else strings such as ${ will be silently dropped. (markt)
fix Various EL TCK failures. (markt)
Cluster
fix Force a disconnect if an error occurs during replication such
as a firewall dropping the connection. (fhanik)
Webapps
add Add new "Find leaks" command to the Manager application.
It allows to detect web applications that have caused memory
leaks on stop, reload or undeploy. (markt/kkolinko)
Other
fix Ensure files in conf directory have CRLF line endings when
using the Windows installer. (kkolinko)
fix Allow special characters recognized by the Windows command-line
shell to be present in the names of CATALINA_HOME/_BASE and
the current directory used to call the Tomcat scripts. (kkolinko)
fix Don't use @Deprecated annotations in javax.servlet.jsp.JspContext
since the specification does not include them in the API
definition. (markt)
add Improve the information in the JAR manifest files. (markt)
minskim [Sun, 19 Sep 2010 14:23:18 +0000 (14:23 +0000)]
Note update of tex-fontspec{,-doc}.
minskim [Sun, 19 Sep 2010 14:21:29 +0000 (14:21 +0000)]
Update tex-fontspec{,-doc} to 2.1.
Changes:
- Added luatex support.
minskim [Sun, 19 Sep 2010 14:15:16 +0000 (14:15 +0000)]
Note update of tex-koma-script.
minskim [Sun, 19 Sep 2010 14:14:29 +0000 (14:14 +0000)]
Update tex-koma-script to 3.07.
Changes:
* scrkpage.dtx: pagestyle bug fixed at \cleardoubleoddpageusingstyle,
\cleardoubleevenpageusingstyle, \cleardoublepageusingstyle
* doc/, doc/ngerman/, doc/ngerman/scrbookreportarticle.tex,
doc/ngerman/linkalias.tex, doc/ngerman/common-11.tex,
doc/ngerman/scrlttr2.tex: neues Font-Element "footnoterule"
dokumentiert
* scrkftn.dtx: new font element footnoterule to allow color changes of
the foot note separation rule
* tocbasic.dtx: expand the arguments of \addtotoclist while adding
them to the internal list of known pairs of extensions and owners
* scrextend.dtx, scrmain.ins, scrkvers.dtx: scrextend identification
added
* doc/, doc/ngerman/, doc/ngerman/scrlttr2.tex: Fehler in
Faltmarkentabelle korrigiert [gemeldet von Adrian Devries]
* scrknpap.dtx: vertical alignment of addresse with parskip setting
different from false fixed
* doc/, doc/Makefile: scrbase.html and tocbasic.html added
* manifest.txt: scrbase.html and tocbasic.html added
* scrjura.dtx: copyright date of generated files fixed
* scrjura.dtx: "beta" removed from version number to not compromise
the LPPL
wiz [Sun, 19 Sep 2010 14:09:41 +0000 (14:09 +0000)]
Set LICENSE.
minskim [Sun, 19 Sep 2010 14:08:11 +0000 (14:08 +0000)]
Note update of tex-pdftex{,-doc}.
minskim [Sun, 19 Sep 2010 14:07:20 +0000 (14:07 +0000)]
Update tex-pdftex{,-doc} to 1.40.11.
Changes:
- Added fontmap entries of ArrowsADF and BulletsADF.
- Changed fontmap entires of antp* fonts to have "cs" prefix.
wiz [Sun, 19 Sep 2010 14:05:46 +0000 (14:05 +0000)]
Updated textproc/py-html2text to 2.39
wiz [Sun, 19 Sep 2010 14:05:35 +0000 (14:05 +0000)]
Update to 2.39:
let people grab https urls (tx Romain)
wiz [Sun, 19 Sep 2010 14:02:13 +0000 (14:02 +0000)]
+ ImageMagick-6.6.4.4, bluefish-2.0.2, calibre-0.7.19, ccache-3.1,
clutter-gtk-0.10.8, gammu-1.28.91, ghostscript-9.0, gssdp-0.8.0,
gupnp-0.14.0, gwaei-1.4.2, kye-0.9.6, lablgtk-2.14.2, mpg123-1.12.4,
p5-PerlMagick-6.6.4.4, postgresql-9.0, py-html2text-2.39,
vala-0.10.0, wine-devel-1.3.3, x264-devel-
20100918.
minskim [Sun, 19 Sep 2010 13:57:38 +0000 (13:57 +0000)]
Update tex-texlive-scripts to r19759.
No version bump because the changed script is not installed in pkgsrc.
obache [Sun, 19 Sep 2010 12:20:41 +0000 (12:20 +0000)]
Updated devel/libmowgli to 0.7.1
obache [Sun, 19 Sep 2010 12:19:42 +0000 (12:19 +0000)]
Update libmowgli to 0.7.1.
Based on PR#43760 by Kamel Derouiche.
summary from changelog
* Add mowgli_patricia_size().
* Update buildsys.
* bug fixes.
obache [Sun, 19 Sep 2010 11:40:05 +0000 (11:40 +0000)]
change "used by" comments to usual format.
wiz [Sun, 19 Sep 2010 11:31:21 +0000 (11:31 +0000)]
Updated time/p5-DateTime-Format-Epoch to 0.13
wiz [Sun, 19 Sep 2010 11:31:12 +0000 (11:31 +0000)]
Update to 0.13, set LICENSE.
0.13 2010-08-25
- GMP is used in two places, so fix second
0.12 2010-08-23
- Move to Module::Build
- Do not use GMP on Windows
- Report bigint library used in tests
wiz [Sun, 19 Sep 2010 11:29:50 +0000 (11:29 +0000)]
Updated time/p5-DateTimeX-Easy to 0.089
wiz [Sun, 19 Sep 2010 11:29:41 +0000 (11:29 +0000)]
Update to 0.089, update dependencies.
0.089:
- Non-development release without DateManip dependency
0.088_1:
- Remove DateTime::Format::DateManip from dependencies due to instability in that package and its dependencies (thanks jjn1056)
wiz [Sun, 19 Sep 2010 11:25:00 +0000 (11:25 +0000)]
Updated textproc/p5-XML-SAX-Writer to 0.53
wiz [Sun, 19 Sep 2010 11:24:51 +0000 (11:24 +0000)]
Update to 0.53, update dependencies, set LICENSE.
0.53 - 2010-07-12
- Switch from Text::IconV to Encode (David Pinkowitz)
- Update package Module::Install metadata discovery
wiz [Sun, 19 Sep 2010 11:20:46 +0000 (11:20 +0000)]
Updated textproc/p5-XML-Sablotron to 1.01
wiz [Sun, 19 Sep 2010 11:20:37 +0000 (11:20 +0000)]
Update to 1.01, changes undocumented. Set LICENSE. Please pkglint.
wiz [Sun, 19 Sep 2010 11:09:57 +0000 (11:09 +0000)]
Updated textproc/p5-XML-Rabbit to 0.0.3
wiz [Sun, 19 Sep 2010 11:09:46 +0000 (11:09 +0000)]
Update to 0.03:
0.0.3 2010-09-16 20:51:06 Europe/Oslo
Fixed RT #61367 which caused issue with Class::MOP 1.05+ / Moose
1.10+ (Thanks to Jesse Luehrs)
wiz [Sun, 19 Sep 2010 11:07:39 +0000 (11:07 +0000)]
Updated textproc/p5-Encode to 2.40
wiz [Sun, 19 Sep 2010 11:07:30 +0000 (11:07 +0000)]
Update to 2.40:
$Revision: 2.40 $ $Date: 2010/09/18 18:39:51 $
! Encode.pm Encode.xs
+ t/utf8ref.t
Addressed: RT#59981: find_encoding("UTF-8")->encode crashes
decode_utf8() is now a little faster, too.
http://rt.cpan.org/Ticket/Display.html?id=59981
http://rt.cpan.org/Ticket/Display.html?id=58541
! lib/Encode/Unicode/UTF7.pm
Addressed: RT#56443 utf-8 flag is not turned off after calling
Encode::encode('UTF-7', $string) to encode an ascii string
http://rt.cpan.org/Ticket/Display.html?id=56443
! t/utf8strict.t
Addressed: RT#57799
http://rt.cpan.org/Ticket/Display.html?id=57799
! lib/Encode/Guess.pm
Addressed: RT#46080: guess_encoding documentation
http://rt.cpan.org/Ticket/Display.html?id=46080
! ucm/nextstep.ucm
Addressed: RT#59668: nextstep encoding is broken - missing ASCII characters
http://rt.cpan.org/Ticket/Display.html?id=59668
! lib/Encode/MIME/Header.pm t/mime-header.t
Addressed: RT#52103: Encode::MIME::Header encoded words not separated by
white space
http://rt.cpan.org/Ticket/Display.html?id=52103
! t/guess.t lib/Encode/Guess.pm
Addressed: Encode: silenced a warning by from_to(..., 'Guess', ...)
http://coderepos.org/share/changeset/37731
wiz [Sun, 19 Sep 2010 11:07:22 +0000 (11:07 +0000)]
Updated textproc/p5-XML-Parser to 2.40
wiz [Sun, 19 Sep 2010 11:07:12 +0000 (11:07 +0000)]
Update to 2.40:
2.40 2010-09-16 (by Alexandr Ciornii)
- Add windows-1251.enc, ibm866.enc, koi8-r.enc (Russian)
- Add windows-1255.enc (Hebrew)
- Update iso-8859-7.enc (RT#40712)
- Use Devel::CheckLib
- Better description of expat packages
- Better Perl style in both code and docs
wiz [Sun, 19 Sep 2010 11:04:56 +0000 (11:04 +0000)]
Updated textproc/p5-Text-SpellChecker to 0.07
wiz [Sun, 19 Sep 2010 11:04:47 +0000 (11:04 +0000)]
Update to 0.07 (nothing changed wrt to hunspell in pkgsrc):
0.06 Tue Sep 14 2010
- made deserialization accept non-blessed refs
0.07 Wed Sep 15 2010
- optional hunspell support
wiz [Sun, 19 Sep 2010 10:59:28 +0000 (10:59 +0000)]
Updated mail/p5-Mail-Audit to 2.225
wiz [Sun, 19 Sep 2010 10:59:19 +0000 (10:59 +0000)]
Update to 2.225, set LICENSE.
2.225 2009-11-23
fix Pod error (thanks, FWIE)
2.224 2009
improve documentation of log level
wiz [Sun, 19 Sep 2010 10:58:25 +0000 (10:58 +0000)]
Updated devel/p5-Mouse to 0.70
wiz [Sun, 19 Sep 2010 10:58:14 +0000 (10:58 +0000)]
Update to 0.70:
0.70 Fri Sep 17 19:07:02 2010
[BUG FIXES]
* Delegations ignored method modifiers
0.69 Mon Sep 13 14:04:41 2010
[BUG FIXES]
* Workaround a problem with Test::Builder 2.00_01, which could cause
SEGV (the HEAD in the repository of tb2 is okay)
wiz [Sun, 19 Sep 2010 10:54:38 +0000 (10:54 +0000)]
Updated devel/p5-Cache-Memcached to 1.29
wiz [Sun, 19 Sep 2010 10:54:28 +0000 (10:54 +0000)]
Update to 1.29:
2010-06-17: version 1.29
* fix warnings spew if calling stats on a down server
* fix buck2sock confusion (Eddie Canales)
* quell ipv6-related warning
https://rt.cpan.org/Ticket/Display.html?id=51761
obache [Sun, 19 Sep 2010 08:38:28 +0000 (08:38 +0000)]
Updated biology/puzzle to 5.2
obache [Sun, 19 Sep 2010 08:38:14 +0000 (08:38 +0000)]
Update puzzle to 5.2.
Based on PR#43775 by Kamel Derouiche.
5.2 14.07.2004 - Version 5.2 !!!
NEW RELEASE
===========
5.2.rc17 14.07.2004 - Manual sources moved out of the package
- numerous changes in the manual
5.2.rc16 12.07.2004 - Makefile.am: double distclean rule removed
- fflush added before mygets() - because of Windows
- manual spell-checked
- '-consmrel' fixed
- usage message extended
5.2.rc15 09.07.2004 - many changes to the manual
5.2.rc14 01.07.2004 - test suite checked, notice about results added
5.2.rc13 01.07.2004 - a number of small fixes (alloc and dealloc in epe)
- convergence output for user branches fixed
- G-T rate output precision fixed
- tests checked and fixed
5.2.rc12 30.06.2004 - branch length convergence output corrected for
user set branch lengths (i.e. no estimate)
- avergedist updated: output of min/max/var/std.dev.
- tstvratio and yrtsratio - no output for GTR
- some future cmdline flags added to help
- -prefix, -sub50, -randseed moved to usage output
- -randseed=# added
- release date changed in code
5.2.rc11 18.06.2004 - flags to set epsilon values added for debugging
(dependent on USE_ADJUSTABLE_EPS compiler switch)
19.06.2004 - quartet percent computation fixed:
quartet sums moved qinfomatr[0] -> qinfomatr[8]
qinfomatr[0]=missing qs. (release 5.2.rc9)
- character state output added to R/Q matrix output
- average computation of dist-matrix changed:
mean=average, variance, std deviation
TODO: proper output / use Korbis S.E. method
25.06.2004 - GTR model ready, menu order HKY, TN, GTR, (SH), HKY
29.06.2004 - many changes to the manual
5.2.rc10 11.06.2004 - fixed no quartets in parameter estimtion for <4 seqs
15.06.2004 - computation of Bayesian weights moved into
subroutine loglkl2weight.
- use subroutine loglkl2weight in parallel code
-> fixing division by zero bug
5.2.rc9 11.06.2004 - sequence number check for <4 and >257 added
<4 - no quartet methods available
>257 - no quartet puzzling available
- counting for missing quartets added for parallel
message checking (TODO: handling and checking)
- output of root branch name added for clock analysis
(sequence name or "internal branch")
5.2.rc8 04.05.2004 - tree tests move to treetest.c/treetest.h
- comments added
- typo corrected (suset -> subset)
08.06.2004 - ELW: continue counting p, when significantly worse
- 1sKH/2sKH: restrict tests to 3 digits (0.00)
(test behaviour: seems not to use some trees (KH),
see above - used, but too low variance)
5.2.rc7 12.02.2004 - corrected typos in usage/README
20.02.2004 - cmdline: prefix flag fixed
22.02.2004 - '-wsr/-wsl' flags fixed: output file
and file name output
5.2.rc6 25.11.2003 - 'FPRINTF...' changed to 'fprintf(STDOUT,'
- strcpy added in openfile-routines
5.2.rc5 25.11.2003 - filename length chack added
- typo FILENAMELENTH corrected
5.2.rc4 19.11.2003 - minor corrections: int/uli comparisons
- SPRNG added to src/sprng
- src/sprng autoconf/automake setup
- Parallel Parameter Estimation (JPDC, Ekki 1)
5.2.rc3 07.11.2003 - WAG Matrix code/docu corrected (Goldman)
TODO: remove additional output for printrmat
TODO: make PEPS* smaller to have better accuracy
in parameter estimation.
5.2.rc2 01.09.2003 - bug from 5.1.pl29 found and eliminated
alloc size wrong: worked if Maxsubset<=Maxspc
TODO: remove out-commented debug messages
5.2.rc1 20.08.2003 - first release candidate for tree-puzzle 5.2
CODE FREEZE
===========
5.1.pl30 20.08.2003 - naming convention changed for manual name input to
use FILENAME.puzzle, ...
5.1.pl29 23.07.2003 - new compiler warnings fixed
- index error naming fixed
- debugging of matrix based permutation (not finished)
5.1.pl28 01.07.2003 - cmdline flags to switch off ml branch lengths
(-notreelh), tree tests (-notreetest)
5.1.pl27 24.06.2003 - output quartet support for incorporated split in
report file
5.1.pl26 06.06.2003 - menu order of tree reconstruction methods altered to
QP, user tree, consensus, dist (no tree)
(last two switched)
5.1.pl25 05.06.2003 - small changes to fix compiler warnings
5.1.pl24 04.06.2003 - changes from benchmark-branch merged:
debug output removed
- checktime fixed: sumtodo <-> done for quartets
5.1.pl23 26.05.2003 - puzzle.c: CONSENSUS -> QUARTPUZ,
allocated unnecessary memory
- additional malloc-checks added (if buffer == NULL)
01.06.2003 - mlmode conditions with readable constants (ml2.c,ml.h)
- garbage collection in tree2bipart/subtree2bipart
5.1.pl22 16.05.2003 - fixing Array Bound Read in fputid
(bug had no effect, but was read before check)
- garbage collection completed in p-step algorithms
and node-label (free_tree/internalnode),
trueIDtmp (allpstep),
- small fix in test script and rebuild of check-files
5.1.pl21 14.05.2003 - fixing free of all allocations in puzzling step
(mrca, recur, split, orig)
5.1.pl20 05.05.2003 - small fix in recursive Alg. (recur.c)
- debug output removed
- cross check removed from (recur.c,mrca.c)
5.1.pl19 27.04.2003 - recursive Alg. (recur.c) fixed:
edge cluster has not to be reconstructed after
adding new leaves only updated.
- debug output removed from recur.c, split.c
- MRCA-based (mrca.c) finished
5.1.pl18 26.04.2003 - recursive (recur.c) finished
TODO: remove debug output
- MRCA (mrca.c) startet
5.1.pl17 25.04.2003 - split-based (split.c) finished
TODO: remove debug output
- recursive (recur.c) startet
5.1.pl16 22.04.2003 - orig pstep alg: updating of edgemap outsourced to
updateedgemap_orig
- writeOTU_orig, writetree_orig, resetedgeinfo_orig,
minimumedgeinfo_orig:
_orig removed, since independent of algorithm type
- onepstep: _orig added (onepstep_orig)
- time check/status output moved to checktime routine.
added to ml step of parallel version
- split.c temporarily added to release
5.1.pl15 18.04.2003 - trueID dependent procedures 'de-trueID-ed'
trueID saved in the tips of the tree.
5.1.pl14 10.04.2003 - consensus stuff moved to consensus.h/.c
- unique tree sorting moved to treesort.h/.c
- changes to pstep-split.h/.c
- changed names of procedures using trueID to
*_trueID
5.1.pl13 07.04.2003 - subsetmatr.[hc] added to process missing data
analyses. (old version, functions in puzzle2)
- deglobalized: guessdatatype, readsequencefile,
getsizesites, initid, getseqs
removed obsolete: getdataset
- moved: output of taxa after input
- computation of Maxbrnch moved from readsequencefile
to inputandinit
- readsubsetfile, permutetaxa_ss added, '-rssm' works
- empty quartets fixed in checkquartet
missing data -> OK, HALT error otherwise
5.1.pl12 04.04.2003 - tests: check-qp-clock regenerated, changes in
Makefile.am and template-test
- obsolete stuff removed: global trueID_orig + alloc,
inittree_orig/freetree_orig from PP_SendDoPermutBlock
PP_slave_do_puzzling (ppuzzle), global _orig
variables (pstep), makenewsplitentries (old),
kh_test (old)
- column variable in tree output routines deglobalized
- copyright headers added to pstep.[hc]
- pstep copied to pstep-{split | mrca | recursive}
- implementation of pstep-split.[ch] started
(done: structure/init, todo: remove _orig stuff)
5.1.pl11 03.04.2003 - tests/Makefile.am: 'build-puzzle failed' fixed
- some changes in test script template
- cleanup: removed obsolete routines
- puzzle module: makenewsplitentriesnew
- ppuzzle module: PP_do_puzzling, PP_SendPermut,
PP_RecvPermut, PP_SendSplits, PP_RecvSplits
- deglobalized: makenewsplitentries, makepart,
computebiparts, copysplit
- parallel puzzling step based on allpstep, onepstep
- time check/status output added to parallel version
(inaccurate since current slave progress not known)
- TIMECHECK_INTERVAL for setting time interval
of status output in ML/puzzling step
- Header when printing 1 PAM rate matrix (-printrmat)
- final pstep copied to pstep-{split | mrca | recursive}
5.1.pl10 02.04.2003 - tests/Makefile.am fixed (TODO: build-puzzle.test)
- Dates/Version adjusted: April 2003/TREE-PUZZLE 5.2
- Dates/Version fixed in doc/*.html, doc/*.tex
- number added to outgroup(menu)/sequence(start) output
- Time measurement only done after each completed
intermediate tree to reduce the the number from
O(Numtrial*n^4) to O(Numtrial) -> less overhead,
but 15min met less accurate.
- quartet support output for splits added in
writeoutputfile for later use (TODO: '#if0'ed)
- (sequential) puzzling step moved from puzzle1.c
to pstep.c: allpstep, onepstep
TODO: parallel puzzling step in ppuzzle.c
(works but with old PP_slave_do_puzzling)
5.1.pl9 31.03.2003 - consensus construction added to menu
- support value computation fixed for phylip tree,
wrong divisor used in consensus
- test directory/Makefile.am/tests created
(make check)
5.1.pl8 30.03.2003 - puzzling step proc's: most variables 'deglobalized'
5.1.pl7 26.03.2003 - original puzzling step out-sourced to pstep-orig.c
and pstep-orig.h
pstep.c, pstep.h (and above) added to Makefile.am
5.1.pl6 25.03.2003 - '-usebranch' option added fr later use
- 'SONJA' added for external parameter estimation
5.1.pl5 24.03.2003 - ml branch length estimation added to consensus option
(todo: plausibility check - is tree file available)
- output for reportfile fixed
- output of likelihood to clocklike tree in treefile
added/fixed
5.1.pl4 21.03.2003 - consensus option added to compute usertree consensus
(only consensus is computed and printed to stdin)
- usertreefile PREFIX fixed
5.1.pl3 20.03.2003 - TP_MAX_EXP_DIFF=b-a>0 introduced, such that
(1.0+exp(a-b) == 1.0) to avoid the computation
as well as possible FPE, when a-b gets very small.
- flag '-prefix=XXX' added: use 'XXX' as filename
prefix instead of 'Infilename'
5.1.pl2 05.12.2002 - PP_Finalized before exit in parallel programs.
5.1.pl1 05.12.2002 - FPE in Brent's algorithm fixed: ()/0, when x=w=v.
5.1 05.11.2002 - Version 5.1 !!!
obache [Sun, 19 Sep 2010 07:53:47 +0000 (07:53 +0000)]
remove a duplicated entry.
obache [Sun, 19 Sep 2010 07:53:11 +0000 (07:53 +0000)]
Updated biology/nut to 15.8
obache [Sun, 19 Sep 2010 07:52:19 +0000 (07:52 +0000)]
Update nut to 15.8.
Based on PR#43776 by Kamel Derouiche for 15.7.
What's new in nut 15.8:
* This release updates the USDA database to include some data corrections for
milk.
* The program's initial data load is now considerably faster.
What's new in nut 15.7:
* This version includes an improvement to the automatic calorie tool to make it
better able to hold fat mass or lean mass constant.
* Also, there is now a facility to explicitly set the ratio between linoleic
and alpha-linolenic acids.
What's new in nut 15.0:
* This release introduces the new USDA Nutrient Database SR22 and allows
current nut installations to have their existing meal records reinterpreted
with the new database.
What's new in nut 14.5a:
* The new feature "Weight Log Regression" does not tell you what you weigh;
what it does is apply linear regression to a series of daily weight and body
fat percentage entries to smooth out the random noise and tell you which
direction your weight is trending, how fast it is going there, and how much
of the change is lean or fat.
obache [Sun, 19 Sep 2010 07:13:52 +0000 (07:13 +0000)]
Updated biology/lucy to 1.20
obache [Sun, 19 Sep 2010 07:13:37 +0000 (07:13 +0000)]
Update lucy to 1.20.
Based on PR#43777 by Kamel Derouiche, with some clean up by me.
Version 1.20, 9/3/2008. This version fixes a bug that caused lucy
to fail when there was too much information on the FASTA header lines
in the input files. Lucy had a 256 character buffer for reading
lines from the input files. If any FASTA header lines were longer
than 256 characters, the remaining characters would get read as part
of the FASTA sequence. The solution implemented in this version is
simply to increase the buffer size to 4096 characters. While that
still leaves the potential for the same error to occur with extremely
long header lines, the limitation that this entails seems reasonable,
and this should fix the problem for all pratical purposes.
---------------------------------------------------------------------
Version 1.19, 12/30/2003. This version fixes a bug that could cause
sequences to be rejected incorrectly in the vector detection step
(phase 6). Because of the way that lucy compares "tags" in the
target sequence with "tags" in the vector sequence, some bases in
the target sequence could get counted more than once in the tally
of bases that match the vector sequence. In rare instances, this
could cause the sequence to exceed the minimum threshold for
rejection, as a result of random sequence similarity.
The reporting of the CLB range in the -debug output file has also
been changed. If the CLB range begins with the first base of the
sequence, then the left coordinate of the CLB range will be reported
as 1 (instead of 0). The range "CLB 0 0" still indicates an empty
CLB range.
obache [Sun, 19 Sep 2010 06:11:04 +0000 (06:11 +0000)]
static link is not supported on MacOS X.
PR#39058
dsainty [Sun, 19 Sep 2010 05:26:44 +0000 (05:26 +0000)]
Remove hashes for obsolete patches.
obache [Sun, 19 Sep 2010 02:19:03 +0000 (02:19 +0000)]
Updated misc/gperiodic to 2.0.10
obache [Sun, 19 Sep 2010 02:18:42 +0000 (02:18 +0000)]
Update gpriodic to 2.0.10.
Based on PR#43779 by Kamel Derouich, with some improvements by me.
2.0.10 : Minor code update & include translations
* Use the standard gtk+ about window
* Include the russian translation contributed by Michael Shigorin
2.0.9 : Minor code update & include translations
* Several minor fixed contributed from the Debian project has been merged.
* Italian and galician translations have been included.
wiz [Sat, 18 Sep 2010 20:48:24 +0000 (20:48 +0000)]
DragonFly fixes from Rumko in PR 42345.
obache [Sat, 18 Sep 2010 12:12:04 +0000 (12:12 +0000)]
Updated devel/gsoap to 2.7.17
obache [Sat, 18 Sep 2010 12:11:36 +0000 (12:11 +0000)]
Update gsoup to 2.7.17.
Based on PR#43789 by Kamel Derouiche.
pkgsrc changes:
* install documentation additionally.
* exactly buildlink with zlib and openssl.
upstream changes:
# Version 2.7.14 (09/07/2009)
* Added support for poll() to replace select() to prevent FD_EXCEEDED.
* Fixed enum local simpleType restriction attribute initialization.
* Fixed utf8 string parsing issue when first char in CDATA could cause
problems.
* Fixed UDP IPv6 multicast-unicast exchange.
* Fixed gzip end-of-stream check.
* Fixed wsdl2h portType operation-input/output matching to ensure operations
can be safely overloaded.
# Version 2.7.15 (11/07/2009)
* Added soap_read_X() and soap_write_X() macros to simplify object reading
and writing.
* Fixed soap_new_X() functions compilation problem.
* Fixed SSL session in context copy.
* Fixed win32 select() in tcp_select().
* Fixed wstrings in unions.
* Fixed preservation of CDATA sections in literal XML strings.
# Version 2.7.16 (04/05/2010)
* Added soapcpp2 option -T to generate auto-test echo server code with an
example in samples/autotest based on 294 patterns for data binding W3C
workgroup.
* Added soapcpp2 option -b to serialize byte arrays char[] as fixed-size
strings (array of xsd:byte otherwise).
* Added xsd:duration serializer: import custom/duration.h.
* Added gsoap header syntax '$' type qualifier to indicate special
struct/class members (array length, union discriminators).
* Added "colon notation" to attach XML prefixes to C/C++ names without
changing the names, an alternative to the ns__ prefix notation.
* Added wsdl2h options -z# for backward compatibility flags (-z1, -z2).
* Added SOAP_XML_IGNORENS to optionally ignore XML namespaces.
* Added WS-ReliableMessaging plugin.
* Added custom xsd:duration serializer.
* Added WSSE plugin soap_wsse_set_wsu_id() to simplify signing of elements
(sets the wsu:Id of a given element tag name).
* Improved handling of struct/class member name clashes resulting from XML
schemas definitions.
* Improved SOAP RPC ecoding response element tag acceptance.
* Improved VxWorks compatibility.
* Fixed FastCGI SOAP/XML processing with MIME attachments.
* Fixed 'typedef std::string XML', for literal XML serialization problem.
* Fixed a rare incorrect well-formedness error when xmlns default namespaces
are absent.
* Fixed a zlib compression error when obsolete crc check is used.
* Fixed WS-Addressing HTTPS message relay (OpenSSL crash).
# Version 2.7.17 (05/10/2010)
* Added WS-Policy 1.2 and 1.5, WS-SecurityPolicy 1.2 support for wsdl2h.
* Improved WS-ReliableMessaging interop and verified MT-safety.
* Improved WS-Security WSSE plugin documentation.
* Fixed soapcpp2 line number error reporting.
* Fixed WSSE plugin soap_wsse_set_wsu_id().
* Fixed wsdl2h cycle problem with recursive xs:include and xs:import.
* Fixed enum translation of enum symbols with colons.
* Fixed std::wstring used as XML attribute value UTF8 encoding (internal stdsoap2 API changed).
obache [Sat, 18 Sep 2010 11:05:08 +0000 (11:05 +0000)]
+ multiskkserv
obache [Sat, 18 Sep 2010 11:04:35 +0000 (11:04 +0000)]
Added inputmethod/multiskkserv version
20100128