biology/bowtie/Makefile

   1 # $FreeBSD$
   2
   3 PORTNAME=               bowtie
   4 DISTVERSIONPREFIX=      v
   5 DISTVERSION=            1.1.2
   6 PORTREVISION=           9
   7 CATEGORIES=             biology
   8
   9 MAINTAINER=     jwb@FreeBSD.org
  10 COMMENT=        Ultrafast, memory-efficient short read aligner
  11
  12 LICENSE=        ART10
  13
  14 # May also work on other 64-bit platforms, but untested
  15 ONLY_FOR_ARCHS= amd64
  16
  17 # FIXME: bowtie-align intermittently dumps core when compiled with clang
  18 # GCC 4.2 does not provide good performance
  19 USES=           gmake perl5 python:run shebangfix
  20 USE_GCC=        yes
  21 USE_PERL5=      run
  22 USE_GITHUB=     yes
  23
  24 SHEBANG_FILES=  scripts/*.pl bowtie bowtie-build bowtie-inspect
  25 GH_ACCOUNT=     BenLangmead
  26
  27 OPTIONS_DEFINE= DOCS
  28
  29 post-install:
  30         ${MKDIR} ${STAGEDIR}${DATADIR}/scripts
  31         ${INSTALL_SCRIPT} \
  32                 ${WRKSRC}/bowtie \
  33                 ${WRKSRC}/bowtie-build \
  34                 ${WRKSRC}/bowtie-inspect \
  35                 ${STAGEDIR}${PREFIX}/bin
  36         ${INSTALL_SCRIPT} \
  37                 ${WRKSRC}/scripts/*.sh \
  38                 ${WRKSRC}/scripts/*.pl \
  39                 ${STAGEDIR}${DATADIR}/scripts
  40         cd ${WRKSRC} && ${COPYTREE_SHARE} \
  41                 'genomes indexes reads' \
  42                 ${STAGEDIR}${DATADIR}
  43         cd ${WRKSRC}/doc && ${COPYTREE_SHARE} \
  44                 \* \
  45                 ${STAGEDIR}${DOCSDIR}
  46         ${STRIP_CMD} ${STAGEDIR}${PREFIX}/bin/*-[sl]
  47
  48 .include <bsd.port.mk>