biology/bcftools/Makefile

   1 # Created by: Reed A. Cartwright <cartwright@asu.edu>
   2 # $FreeBSD$
   3
   4 PORTNAME=       bcftools
   5 PORTVERSION=    1.3.1
   6 PORTREVISION=   2
   7 CATEGORIES=     biology
   8
   9 MAINTAINER=     cartwright@asu.edu
  10 COMMENT=        Tools for manipulating next-generation sequencing data
  11
  12 LICENSE=        MIT
  13 # LICENSE_FILE= ${WRKSRC}/LICENSE
  14
  15 BUILD_DEPENDS=  htslib>=1.3:biology/htslib
  16 LIB_DEPENDS=    libhts.so:biology/htslib
  17 TEST_DEPENDS=   bash:shells/bash
  18
  19 CONFLICTS_BUILD=openssl
  20
  21 USE_GITHUB=     yes
  22 GH_ACCOUNT=     samtools
  23
  24 USES=           gmake perl5 shebangfix
  25 USE_PERL5=      test
  26 SUB_FILES=      pkg-message
  27 SHEBANG_FILES=  vcfutils.pl plot-vcfstats plugins/color-chrs.pl test/test.pl
  28
  29 OPTIONS_DEFINE= GPL
  30 GPL_DESC=       Enable modules that rely on GPL code
  31 OPTIONS_DEFAULT=        GPL
  32
  33 GPL_LIB_DEPENDS=        libgsl.so:math/gsl
  34
  35 .include <bsd.port.options.mk>
  36
  37 CPPFLAGS+=      -I${LOCALBASE}/include
  38 LDFLAGS+=       -L${LOCALBASE}/lib
  39
  40 MAKE_ENV=       INSTALL_LIB="${INSTALL_LIB}" \
  41                 INSTALL_DATA="${INSTALL_DATA}" \
  42                 INSTALL_PROGRAM="${INSTALL_PROGRAM}" \
  43                 INSTALL_SCRIPT="${INSTALL_SCRIPT}" \
  44                 INSTALL_DIR="${MKDIR}"
  45
  46 .if ${PORT_OPTIONS:MGPL}
  47 MAKE_ENV+=      USE_GPL=1
  48 LICENSE=        GPLv3
  49 .endif
  50
  51 PLIST_SUB=      PORTVERSION="${PORTVERSION}"
  52
  53 TEST_TARGET=    test
  54
  55 .include <bsd.port.mk>