biology/bcftools/Makefile

   1 # Created by: Reed A. Cartwright <cartwright@asu.edu>
   2 # $FreeBSD$
   3
   4 PORTNAME=       bcftools
   5 PORTVERSION=    1.2
   6 CATEGORIES=     biology
   7
   8 MAINTAINER=     cartwright@asu.edu
   9 COMMENT=        Tools for manipulating next-generation sequencing data
  10
  11 LICENSE=        MIT
  12 LICENSE_FILE=   ${WRKSRC}/LICENSE
  13
  14 BUILD_DEPENDS=  htslib>=1.2:${PORTSDIR}/biology/htslib
  15 LIB_DEPENDS=    libhts.so:${PORTSDIR}/biology/htslib
  16
  17 USE_GITHUB=     yes
  18 GH_ACCOUNT=     samtools
  19
  20 USES=           gmake shebangfix
  21 SUB_FILES=      pkg-message
  22 SHEBANG_FILES=  vcfutils.pl
  23
  24 OPTIONS_DEFINE= GPL
  25 GPL_DESC=       Enable modules that rely on GPL code
  26 OPTIONS_DEFAULT=        GPL
  27
  28 GPL_LIB_DEPENDS=        libgsl.so:${PORTSDIR}/math/gsl
  29
  30 .include <bsd.port.options.mk>
  31
  32 CPPFLAGS+=      -I${LOCALBASE}/include
  33 LDFLAGS+=       -L${LOCALBASE}/lib
  34
  35 MAKE_ENV=       INSTALL_LIB="${INSTALL_LIB}" \
  36                         INSTALL_DATA="${INSTALL_DATA}" \
  37                         INSTALL_PROGRAM="${INSTALL_PROGRAM}" \
  38                         INSTALL_SCRIPT="${INSTALL_SCRIPT}" \
  39                         INSTALL_DIR="${MKDIR}"
  40
  41 .if ${PORT_OPTIONS:MGPL}
  42 MAKE_ENV+=      USE_GPL=1
  43 LICENSE=        GPLv3
  44 .endif
  45
  46 PLIST_SUB=      PORTVERSION="${PORTVERSION}"
  47
  48 .include <bsd.port.mk>