biology/bcftools/Makefile

   1 # Created by: Reed A. Cartwright <cartwright@asu.edu>
   2 # $FreeBSD$
   3
   4 PORTNAME=       bcftools
   5 PORTVERSION=    1.6
   6 PORTREVISION=   1
   7 CATEGORIES=     biology
   8
   9 MAINTAINER=     cartwright@asu.edu
  10 COMMENT=        Tools for manipulating next-generation sequencing data
  11
  12 LICENSE=        MIT
  13 # LICENSE_FILE= ${WRKSRC}/LICENSE
  14
  15 BUILD_DEPENDS=  htslib>=1.6:biology/htslib
  16 LIB_DEPENDS=    libhts.so:biology/htslib
  17 TEST_DEPENDS=   bash:shells/bash
  18
  19 CONFLICTS_BUILD=openssl
  20
  21 USE_GITHUB=     yes
  22 GH_ACCOUNT=     samtools
  23
  24 USES=           autoreconf gmake perl5 python:env shebangfix
  25 USE_PERL5=      test
  26 GNU_CONFIGURE=  yes
  27 SUB_FILES=      pkg-message
  28 SHEBANG_FILES=  misc/* test/test.pl
  29
  30 OPTIONS_DEFINE= GPL
  31 GPL_DESC=       Enable modules that rely on GPL code
  32 OPTIONS_DEFAULT=        GPL
  33
  34 GPL_LIB_DEPENDS=        libgsl.so:math/gsl
  35
  36 .include <bsd.port.options.mk>
  37
  38 CPPFLAGS+=      -I${LOCALBASE}/include
  39 LDFLAGS+=       -L${LOCALBASE}/lib
  40
  41 .if ${PORT_OPTIONS:MGPL}
  42 MAKE_ENV+=      USE_GPL=1
  43 LICENSE=        GPLv3
  44 .endif
  45
  46 TEST_TARGET=    test
  47
  48 post-patch:
  49         @${GREP} -q '@PORTVERSION@' ${WRKSRC}/configure.ac || (echo "@PORTVERSION@ in file/patch-configure.ac is overwritten probably due to using 'make makepatch'"; exit 1)
  50         @${REINPLACE_CMD} -e 's|@PORTVERSION@|${PORTVERSION}|g' ${WRKSRC}/configure.ac
  51
  52 .include <bsd.port.mk>