bucket_06/R

   1 # Buildsheet autogenerated by ravenadm tool -- Do not edit.
   2
   3 NAMEBASE=               R
   4 VERSION=                3.6.3
   5 KEYWORDS=               math lang
   6 VARIANTS=               standard
   7 SDESC[standard]=        Statistical computing and graphics environment
   8 HOMEPAGE=               https://www.r-project.org/
   9 CONTACT=                nobody
  10
  11 DOWNLOAD_GROUPS=        main
  12 SITES[main]=            CRAN/src/base/R-3
  13 DISTFILE[1]=            R-3.6.3.tar.gz:main
  14 DF_INDEX=               1
  15 SPKGS[standard]=        complete
  16                         primary
  17                         nls
  18                         docs
  19
  20 OPTIONS_AVAILABLE=      none
  21 OPTIONS_STANDARD=       none
  22
  23 BUILD_DEPENDS=          pcre:static:standard
  24 BUILDRUN_DEPENDS=       pcre:shared:standard
  25                         curl:primary:standard
  26                         tiff:primary:standard
  27                         ghostscript:primary:standard
  28                         icu:single:standard
  29                         xz:single:standard
  30
  31 USES=                   makeinfo readline perl:build libtool zlib gmake
  32                         iconv png jpeg pkgconfig tcl:tk gettext-runtime
  33                         gettext-tools fortran:primary
  34 GNOME_COMPONENTS=       cairo pango
  35 XORG_COMPONENTS=        ice sm x11 xext xmu xscrnsaver xt
  36
  37 LICENSE=                GPLv2+:primary
  38 LICENSE_TERMS=          primary:{{WRKDIR}}/TERMS
  39 LICENSE_FILE=           GPLv2+:{{WRKSRC}}/COPYING
  40 LICENSE_AWK=            TERMS:"HAVE_CONFIG_H"
  41 LICENSE_SOURCE=         TERMS:{{WRKSRC}}/src/main/main.c
  42 LICENSE_SCHEME=         solo
  43
  44 INFO=                   primary:R-admin
  45                         primary:R-data
  46                         primary:R-exts
  47                         primary:R-FAQ
  48                         primary:R-intro
  49                         primary:R-ints
  50                         primary:R-lang
  51 FPC_EQUIVALENT=         math/R
  52 INFO_SUBDIR=            .
  53
  54 MUST_CONFIGURE=         gnu
  55 CONFIGURE_ARGS=         --disable-java
  56                         --with-readline
  57                         --with-x
  58                         --with-cairo
  59                         --with-ICU
  60                         --with-libpng
  61                         --with-libtiff
  62                         --with-jpeglib
  63                         --with-tcltk
  64                         --enable-R-shlib
  65                         --enable-R-profiling
  66                         --enable-BLAS-shlib
  67                         --enable-long-double
  68                         --enable-openmp
  69                         --enable-nls
  70                         --without-blas
  71                         --without-lapack
  72                         rdocdir={{STD_DOCDIR}}
  73 CONFIGURE_ENV=          r_cv_header_jpeglib_h=yes
  74
  75 INSTALL_TARGET=         install-strip install-info
  76 INSTALL_REQ_TOOLCHAIN=  yes
  77 SOVERSION=              3.6
  78
  79 LDFLAGS=                -Wl,-rpath,{{PREFIX}}/lib/R/lib
  80
  81 post-patch:
  82         ${REINPLACE_CMD} -e "s|/usr/local|${LOCALBASE}|g" \
  83                 ${WRKSRC}/configure
  84         ${REINPLACE_CMD} "s|%%LIBVER%%|3.6|" \
  85                 ${WRKSRC}/src/main/Makefile.in \
  86                 ${WRKSRC}/src/extra/blas/Makefile.in \
  87                 ${WRKSRC}/src/modules/lapack/Makefile.in
  88
  89 post-install:
  90         ${REINPLACE_CMD} -i'' -e "s| -lR| -lR -lRblas|" \
  91                 ${STAGEDIR}${PREFIX}/lib/pkgconfig/libR.pc
  92         ${RM} ${STAGEDIR}${STD_DOCDIR}/COPY*
  93         ${RM} ${STAGEDIR}${PREFIX}/lib/R/COPY*
  94
  95 [FILE:1028:descriptions/desc.primary]
  96 R is a system for statistical computation and graphics. It consists of a
  97 language plus a run-time environment with graphics, a debugger, access to
  98 certain system functions, and the ability to run programs stored in script
  99 files.
 100
 101 The core of R is an interpreted computer language which allows branching
 102 and looping as well as modular programming using functions.  Most of the
 103 user-visible functions in R are written in R. It is possible for the user
 104 to interface to procedures written in the C, C++, or FORTRAN languages
 105 for efficiency. The R distribution contains functionality for a large
 106 number of statistical procedures. Among these are: linear and generalized
 107 linear models, nonlinear regression models, time series analysis, classical
 108 parametric and nonparametric tests, clustering and smoothing. There is also
 109 a large set of functions which provide a flexible graphical environment for
 110 creating various kinds of data presentations. Additional modules ("add-on
 111 packages") are available for a variety of specific purposes.
 112
 113
 114 [FILE:93:distinfo]
 115 89302990d8e8add536e12125ec591d6951022cf8475861b3690bc8bf1cefaa8f     33308185 R-3.6.3.tar.gz
 116
 117
 118 [FILE:19066:manifests/plist.primary]
 119 bin/
 120  R
 121  Rscript
 122 lib/R/SVN-REVISION
 123 lib/R/bin/
 124  BATCH
 125  COMPILE
 126  INSTALL
 127  LINK
 128  R
 129  REMOVE
 130  Rcmd
 131  Rd2pdf
 132  Rdconv
 133  Rdiff
 134  Rprof
 135  Rscript
 136  SHLIB
 137  Stangle
 138  Sweave
 139  build
 140  check
 141  config
 142  javareconf
 143  libtool
 144  mkinstalldirs
 145  pager
 146  rtags
 147 lib/R/bin/exec/R
 148 lib/R/etc/
 149  Makeconf
 150  Renviron
 151  javaconf
 152  ldpaths
 153  repositories
 154 lib/R/include/
 155  R.h
 156  Rconfig.h
 157  Rdefines.h
 158  Rembedded.h
 159  Rinterface.h
 160  Rinternals.h
 161  Rmath.h
 162  Rversion.h
 163  S.h
 164 lib/R/include/R_ext/
 165  Altrep.h
 166  Applic.h
 167  Arith.h
 168  BLAS.h
 169  Boolean.h
 170  Callbacks.h
 171  Complex.h
 172  Connections.h
 173  Constants.h
 174  Error.h
 175  GetX11Image.h
 176  GraphicsDevice.h
 177  GraphicsEngine.h
 178  Itermacros.h
 179  Lapack.h
 180  Linpack.h
 181  MathThreads.h
 182  Memory.h
 183  Parse.h
 184  Print.h
 185  PrtUtil.h
 186  QuartzDevice.h
 187  R-ftp-http.h
 188  RS.h
 189  RStartup.h
 190  Rallocators.h
 191  Random.h
 192  Rdynload.h
 193  Riconv.h
 194  Utils.h
 195  Visibility.h
 196  eventloop.h
 197  libextern.h
 198  stats_package.h
 199  stats_stubs.h
 200 lib/R/lib/
 201  libR.so
 202  libR.so.%%SOVERSION%%
 203  libRblas.so
 204  libRblas.so.%%SOVERSION%%
 205  libRlapack.so
 206  libRlapack.so.%%SOVERSION%%
 207 lib/R/library/KernSmooth/
 208  DESCRIPTION
 209  INDEX
 210  NAMESPACE
 211 lib/R/library/KernSmooth/Meta/
 212  Rd.rds
 213  features.rds
 214  hsearch.rds
 215  links.rds
 216  nsInfo.rds
 217  package.rds
 218 lib/R/library/KernSmooth/R/
 219  KernSmooth
 220  KernSmooth.rdb
 221  KernSmooth.rdx
 222 lib/R/library/KernSmooth/help/
 223  AnIndex
 224  KernSmooth.rdb
 225  KernSmooth.rdx
 226  aliases.rds
 227  paths.rds
 228 lib/R/library/KernSmooth/html/
 229  00Index.html
 230  R.css
 231 lib/R/library/KernSmooth/libs/KernSmooth.so
 232 lib/R/library/MASS/
 233  CITATION
 234  DESCRIPTION
 235  INDEX
 236  NAMESPACE
 237  NEWS
 238 lib/R/library/MASS/Meta/
 239  Rd.rds
 240  data.rds
 241  features.rds
 242  hsearch.rds
 243  links.rds
 244  nsInfo.rds
 245  package.rds
 246 lib/R/library/MASS/R/
 247  MASS
 248  MASS.rdb
 249  MASS.rdx
 250 lib/R/library/MASS/data/
 251  Rdata.rdb
 252  Rdata.rds
 253  Rdata.rdx
 254 lib/R/library/MASS/help/
 255  AnIndex
 256  MASS.rdb
 257  MASS.rdx
 258  aliases.rds
 259  paths.rds
 260 lib/R/library/MASS/html/
 261  00Index.html
 262  R.css
 263 lib/R/library/MASS/libs/MASS.so
 264 lib/R/library/MASS/scripts/
 265  ch01.R
 266  ch02.R
 267  ch03.R
 268  ch04.R
 269  ch05.R
 270  ch06.R
 271  ch07.R
 272  ch08.R
 273  ch09.R
 274  ch10.R
 275  ch11.R
 276  ch12.R
 277  ch13.R
 278  ch14.R
 279  ch15.R
 280  ch16.R
 281 lib/R/library/Matrix/
 282  Copyrights
 283  DESCRIPTION
 284  Doxyfile
 285  INDEX
 286  LICENCE
 287  NAMESPACE
 288  NEWS.Rd
 289  test-tools-1.R
 290  test-tools-Matrix.R
 291  test-tools.R
 292 lib/R/library/Matrix/Meta/
 293  Rd.rds
 294  data.rds
 295  features.rds
 296  hsearch.rds
 297  links.rds
 298  nsInfo.rds
 299  package.rds
 300  vignette.rds
 301 lib/R/library/Matrix/R/
 302  Matrix
 303  Matrix.rdb
 304  Matrix.rdx
 305 lib/R/library/Matrix/data/
 306  CAex.R
 307  KNex.R
 308  USCounties.R
 309 lib/R/library/Matrix/doc/
 310  Announce.txt
 311  Comparisons.R
 312  Comparisons.Rnw
 313  Comparisons.pdf
 314  Design-issues.R
 315  Design-issues.Rnw
 316  Design-issues.pdf
 317  Intro2Matrix.R
 318  Intro2Matrix.Rnw
 319  Intro2Matrix.pdf
 320  Introduction.R
 321  Introduction.Rnw
 322  Introduction.pdf
 323  index.html
 324  sparseModels.R
 325  sparseModels.Rnw
 326  sparseModels.pdf
 327 lib/R/library/Matrix/doc/SuiteSparse/
 328  AMD.txt
 329  CHOLMOD.txt
 330  COLAMD.txt
 331  SPQR.txt
 332  SuiteSparse_config.txt
 333  UserGuides.txt
 334 lib/R/library/Matrix/external/
 335  CAex_slots.rda
 336  KNex_slots.rda
 337  USCounties_slots.rda
 338  lund_a.mtx
 339  lund_a.rsa
 340  pores_1.mtx
 341  symA.rda
 342  symW.rda
 343  test3comp.rda
 344  utm300.rua
 345  wrong.mtx
 346 lib/R/library/Matrix/help/
 347  AnIndex
 348  Matrix.rdb
 349  Matrix.rdx
 350  aliases.rds
 351  paths.rds
 352 lib/R/library/Matrix/html/
 353  00Index.html
 354  R.css
 355 lib/R/library/Matrix/include/
 356  Matrix.h
 357  Matrix_stubs.c
 358  cholmod.h
 359 lib/R/library/Matrix/libs/Matrix.so
 360 lib/R/library/base/
 361  CITATION
 362  DESCRIPTION
 363  INDEX
 364 lib/R/library/base/Meta/
 365  Rd.rds
 366  demo.rds
 367  features.rds
 368  hsearch.rds
 369  links.rds
 370  package.rds
 371 lib/R/library/base/R/
 372  Rprofile
 373  base
 374  base.rdb
 375  base.rdx
 376 lib/R/library/base/demo/
 377  error.catching.R
 378  is.things.R
 379  recursion.R
 380  scoping.R
 381 lib/R/library/base/help/
 382  AnIndex
 383  aliases.rds
 384  base.rdb
 385  base.rdx
 386  paths.rds
 387 lib/R/library/base/html/
 388  00Index.html
 389  R.css
 390 lib/R/library/boot/
 391  CITATION
 392  DESCRIPTION
 393  INDEX
 394  NAMESPACE
 395  bd.q
 396 lib/R/library/boot/Meta/
 397  Rd.rds
 398  data.rds
 399  features.rds
 400  hsearch.rds
 401  links.rds
 402  nsInfo.rds
 403  package.rds
 404 lib/R/library/boot/R/
 405  boot
 406  boot.rdb
 407  boot.rdx
 408 lib/R/library/boot/data/
 409  Rdata.rdb
 410  Rdata.rds
 411  Rdata.rdx
 412 lib/R/library/boot/help/
 413  AnIndex
 414  aliases.rds
 415  boot.rdb
 416  boot.rdx
 417  paths.rds
 418 lib/R/library/boot/html/
 419  00Index.html
 420  R.css
 421 lib/R/library/class/
 422  CITATION
 423  DESCRIPTION
 424  INDEX
 425  NAMESPACE
 426  NEWS
 427 lib/R/library/class/Meta/
 428  Rd.rds
 429  features.rds
 430  hsearch.rds
 431  links.rds
 432  nsInfo.rds
 433  package.rds
 434 lib/R/library/class/R/
 435  class
 436  class.rdb
 437  class.rdx
 438 lib/R/library/class/help/
 439  AnIndex
 440  aliases.rds
 441  class.rdb
 442  class.rdx
 443  paths.rds
 444 lib/R/library/class/html/
 445  00Index.html
 446  R.css
 447 lib/R/library/class/libs/class.so
 448 lib/R/library/cluster/
 449  CITATION
 450  DESCRIPTION
 451  INDEX
 452  NAMESPACE
 453  NEWS.Rd
 454  test-tools.R
 455 lib/R/library/cluster/Meta/
 456  Rd.rds
 457  data.rds
 458  features.rds
 459  hsearch.rds
 460  links.rds
 461  nsInfo.rds
 462  package.rds
 463 lib/R/library/cluster/R/
 464  cluster
 465  cluster.rdb
 466  cluster.rdx
 467 lib/R/library/cluster/data/
 468  Rdata.rdb
 469  Rdata.rds
 470  Rdata.rdx
 471 lib/R/library/cluster/help/
 472  AnIndex
 473  aliases.rds
 474  cluster.rdb
 475  cluster.rdx
 476  paths.rds
 477 lib/R/library/cluster/html/
 478  00Index.html
 479  R.css
 480 lib/R/library/cluster/libs/cluster.so
 481 lib/R/library/codetools/
 482  DESCRIPTION
 483  INDEX
 484  NAMESPACE
 485 lib/R/library/codetools/Meta/
 486  Rd.rds
 487  features.rds
 488  hsearch.rds
 489  links.rds
 490  nsInfo.rds
 491  package.rds
 492 lib/R/library/codetools/R/
 493  codetools
 494  codetools.rdb
 495  codetools.rdx
 496 lib/R/library/codetools/help/
 497  AnIndex
 498  aliases.rds
 499  codetools.rdb
 500  codetools.rdx
 501  paths.rds
 502 lib/R/library/codetools/html/
 503  00Index.html
 504  R.css
 505 lib/R/library/compiler/
 506  DESCRIPTION
 507  INDEX
 508  NAMESPACE
 509 lib/R/library/compiler/Meta/
 510  Rd.rds
 511  features.rds
 512  hsearch.rds
 513  links.rds
 514  nsInfo.rds
 515  package.rds
 516 lib/R/library/compiler/R/
 517  compiler
 518  compiler.rdb
 519  compiler.rdx
 520 lib/R/library/compiler/help/
 521  AnIndex
 522  aliases.rds
 523  compiler.rdb
 524  compiler.rdx
 525  paths.rds
 526 lib/R/library/compiler/html/
 527  00Index.html
 528  R.css
 529 lib/R/library/datasets/
 530  DESCRIPTION
 531  INDEX
 532  NAMESPACE
 533 lib/R/library/datasets/Meta/
 534  Rd.rds
 535  data.rds
 536  features.rds
 537  hsearch.rds
 538  links.rds
 539  nsInfo.rds
 540  package.rds
 541 lib/R/library/datasets/data/
 542  Rdata.rdb
 543  Rdata.rds
 544  Rdata.rdx
 545  morley.tab
 546 lib/R/library/datasets/help/
 547  AnIndex
 548  aliases.rds
 549  datasets.rdb
 550  datasets.rdx
 551  paths.rds
 552 lib/R/library/datasets/html/
 553  00Index.html
 554  R.css
 555 lib/R/library/foreign/
 556  COPYRIGHTS
 557  DESCRIPTION
 558  INDEX
 559  NAMESPACE
 560 lib/R/library/foreign/Meta/
 561  Rd.rds
 562  features.rds
 563  hsearch.rds
 564  links.rds
 565  nsInfo.rds
 566  package.rds
 567 lib/R/library/foreign/R/
 568  foreign
 569  foreign.rdb
 570  foreign.rdx
 571 lib/R/library/foreign/files/
 572  HillRace.SYD
 573  Iris.syd
 574  electric.sav
 575  sids.dbf
 576  testdata.sav
 577 lib/R/library/foreign/help/
 578  AnIndex
 579  aliases.rds
 580  foreign.rdb
 581  foreign.rdx
 582  paths.rds
 583 lib/R/library/foreign/html/
 584  00Index.html
 585  R.css
 586 lib/R/library/foreign/libs/foreign.so
 587 lib/R/library/grDevices/
 588  DESCRIPTION
 589  INDEX
 590  NAMESPACE
 591 lib/R/library/grDevices/Meta/
 592  Rd.rds
 593  demo.rds
 594  features.rds
 595  hsearch.rds
 596  links.rds
 597  nsInfo.rds
 598  package.rds
 599 lib/R/library/grDevices/R/
 600  grDevices
 601  grDevices.rdb
 602  grDevices.rdx
 603 lib/R/library/grDevices/afm/
 604  ArialMT-Bold.afm.gz
 605  ArialMT-BoldItalic.afm.gz
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 698  colors.R
 699  hclColors.R
 700 lib/R/library/grDevices/enc/
 701  AdobeStd.enc
 702  AdobeSym.enc
 703  CP1250.enc
 704  CP1251.enc
 705  CP1253.enc
 706  CP1257.enc
 707  Cyrillic.enc
 708  Greek.enc
 709  ISOLatin1.enc
 710  ISOLatin2.enc
 711  ISOLatin7.enc
 712  ISOLatin9.enc
 713  KOI8-R.enc
 714  KOI8-U.enc
 715  MacRoman.enc
 716  PDFDoc.enc
 717  TeXtext.enc
 718  WinAnsi.enc
 719 lib/R/library/grDevices/help/
 720  AnIndex
 721  aliases.rds
 722  grDevices.rdb
 723  grDevices.rdx
 724  paths.rds
 725 lib/R/library/grDevices/html/
 726  00Index.html
 727  R.css
 728 lib/R/library/grDevices/icc/
 729  srgb
 730  srgb.flate
 731 lib/R/library/grDevices/libs/
 732  cairo.so
 733  grDevices.so
 734 lib/R/library/graphics/
 735  DESCRIPTION
 736  INDEX
 737  NAMESPACE
 738 lib/R/library/graphics/Meta/
 739  Rd.rds
 740  demo.rds
 741  features.rds
 742  hsearch.rds
 743  links.rds
 744  nsInfo.rds
 745  package.rds
 746 lib/R/library/graphics/R/
 747  graphics
 748  graphics.rdb
 749  graphics.rdx
 750 lib/R/library/graphics/demo/
 751  Hershey.R
 752  Japanese.R
 753  graphics.R
 754  image.R
 755  persp.R
 756  plotmath.R
 757 lib/R/library/graphics/help/
 758  AnIndex
 759  aliases.rds
 760  graphics.rdb
 761  graphics.rdx
 762  paths.rds
 763 lib/R/library/graphics/help/figures/
 764  mai.pdf
 765  mai.png
 766  oma.pdf
 767  oma.png
 768  pch.pdf
 769  pch.png
 770  pch.svg
 771 lib/R/library/graphics/html/
 772  00Index.html
 773  R.css
 774 lib/R/library/graphics/libs/graphics.so
 775 lib/R/library/grid/
 776  DESCRIPTION
 777  INDEX
 778  NAMESPACE
 779 lib/R/library/grid/Meta/
 780  Rd.rds
 781  features.rds
 782  hsearch.rds
 783  links.rds
 784  nsInfo.rds
 785  package.rds
 786 lib/R/library/grid/R/
 787  grid
 788  grid.rdb
 789  grid.rdx
 790 lib/R/library/grid/doc/
 791  DivByZero.txt
 792  changes.txt
 793  displaylist.pdf
 794  frame.pdf
 795  grid.pdf
 796  grobs.pdf
 797  interactive.pdf
 798  locndimn.pdf
 799  moveline.pdf
 800  nonfinite.pdf
 801  plotexample.pdf
 802  rotated.pdf
 803  saveload.pdf
 804  sharing.pdf
 805  viewports.pdf
 806 lib/R/library/grid/help/
 807  AnIndex
 808  aliases.rds
 809  grid.rdb
 810  grid.rdx
 811  paths.rds
 812 lib/R/library/grid/html/
 813  00Index.html
 814  R.css
 815 lib/R/library/grid/libs/grid.so
 816 lib/R/library/lattice/
 817  CITATION
 818  DESCRIPTION
 819  INDEX
 820  NAMESPACE
 821  NEWS
 822 lib/R/library/lattice/Meta/
 823  Rd.rds
 824  data.rds
 825  demo.rds
 826  features.rds
 827  hsearch.rds
 828  links.rds
 829  nsInfo.rds
 830  package.rds
 831 lib/R/library/lattice/R/
 832  lattice
 833  lattice.rdb
 834  lattice.rdx
 835 lib/R/library/lattice/data/
 836  Rdata.rdb
 837  Rdata.rds
 838  Rdata.rdx
 839 lib/R/library/lattice/demo/
 840  intervals.R
 841  labels.R
 842  lattice.R
 843  panel.R
 844 lib/R/library/lattice/help/
 845  AnIndex
 846  aliases.rds
 847  lattice.rdb
 848  lattice.rdx
 849  paths.rds
 850 lib/R/library/lattice/html/
 851  00Index.html
 852  R.css
 853 lib/R/library/lattice/libs/lattice.so
 854 lib/R/library/methods/
 855  DESCRIPTION
 856  INDEX
 857  NAMESPACE
 858 lib/R/library/methods/Meta/
 859  Rd.rds
 860  features.rds
 861  hsearch.rds
 862  links.rds
 863  nsInfo.rds
 864  package.rds
 865 lib/R/library/methods/R/
 866  methods
 867  methods.rdb
 868  methods.rdx
 869 lib/R/library/methods/help/
 870  AnIndex
 871  aliases.rds
 872  methods.rdb
 873  methods.rdx
 874  paths.rds
 875 lib/R/library/methods/html/
 876  00Index.html
 877  R.css
 878 lib/R/library/methods/libs/methods.so
 879 lib/R/library/mgcv/
 880  CITATION
 881  DESCRIPTION
 882  INDEX
 883  NAMESPACE
 884 lib/R/library/mgcv/Meta/
 885  Rd.rds
 886  data.rds
 887  features.rds
 888  hsearch.rds
 889  links.rds
 890  nsInfo.rds
 891  package.rds
 892 lib/R/library/mgcv/R/
 893  mgcv
 894  mgcv.rdb
 895  mgcv.rdx
 896 lib/R/library/mgcv/data/
 897  columb.polys.rda
 898  columb.rda
 899 lib/R/library/mgcv/help/
 900  AnIndex
 901  aliases.rds
 902  mgcv.rdb
 903  mgcv.rdx
 904  paths.rds
 905 lib/R/library/mgcv/html/
 906  00Index.html
 907  R.css
 908 lib/R/library/mgcv/libs/mgcv.so
 909 lib/R/library/nlme/
 910  CITATION
 911  DESCRIPTION
 912  INDEX
 913  LICENCE
 914  NAMESPACE
 915 lib/R/library/nlme/Meta/
 916  Rd.rds
 917  data.rds
 918  features.rds
 919  hsearch.rds
 920  links.rds
 921  nsInfo.rds
 922  package.rds
 923 lib/R/library/nlme/R/
 924  nlme
 925  nlme.rdb
 926  nlme.rdx
 927 lib/R/library/nlme/data/
 928  Rdata.rdb
 929  Rdata.rds
 930  Rdata.rdx
 931 lib/R/library/nlme/help/
 932  AnIndex
 933  aliases.rds
 934  nlme.rdb
 935  nlme.rdx
 936  paths.rds
 937 lib/R/library/nlme/html/
 938  00Index.html
 939  R.css
 940 lib/R/library/nlme/libs/nlme.so
 941 lib/R/library/nlme/mlbook/
 942  README
 943  ch04.R
 944  ch05.R
 945 lib/R/library/nlme/scripts/
 946  ch01.R
 947  ch02.R
 948  ch03.R
 949  ch04.R
 950  ch05.R
 951  ch06.R
 952  ch08.R
 953  runme.R
 954  sims.rda
 955 lib/R/library/nnet/
 956  CITATION
 957  DESCRIPTION
 958  INDEX
 959  NAMESPACE
 960  NEWS
 961 lib/R/library/nnet/Meta/
 962  Rd.rds
 963  features.rds
 964  hsearch.rds
 965  links.rds
 966  nsInfo.rds
 967  package.rds
 968 lib/R/library/nnet/R/
 969  nnet
 970  nnet.rdb
 971  nnet.rdx
 972 lib/R/library/nnet/help/
 973  AnIndex
 974  aliases.rds
 975  nnet.rdb
 976  nnet.rdx
 977  paths.rds
 978 lib/R/library/nnet/html/
 979  00Index.html
 980  R.css
 981 lib/R/library/nnet/libs/nnet.so
 982 lib/R/library/parallel/
 983  DESCRIPTION
 984  INDEX
 985  NAMESPACE
 986 lib/R/library/parallel/Meta/
 987  Rd.rds
 988  features.rds
 989  hsearch.rds
 990  links.rds
 991  nsInfo.rds
 992  package.rds
 993 lib/R/library/parallel/R/
 994  parallel
 995  parallel.rdb
 996  parallel.rdx
 997 lib/R/library/parallel/doc/parallel.pdf
 998 lib/R/library/parallel/help/
 999  AnIndex
1000  aliases.rds
1001  parallel.rdb
1002  parallel.rdx
1003  paths.rds
1004 lib/R/library/parallel/html/
1005  00Index.html
1006  R.css
1007 lib/R/library/parallel/libs/parallel.so
1008 lib/R/library/rpart/
1009  DESCRIPTION
1010  INDEX
1011  NAMESPACE
1012  NEWS.Rd
1013 lib/R/library/rpart/Meta/
1014  Rd.rds
1015  data.rds
1016  features.rds
1017  hsearch.rds
1018  links.rds
1019  nsInfo.rds
1020  package.rds
1021  vignette.rds
1022 lib/R/library/rpart/R/
1023  rpart
1024  rpart.rdb
1025  rpart.rdx
1026 lib/R/library/rpart/data/
1027  Rdata.rdb
1028  Rdata.rds
1029  Rdata.rdx
1030 lib/R/library/rpart/doc/
1031  index.html
1032  longintro.R
1033  longintro.Rnw
1034  longintro.pdf
1035  usercode.R
1036  usercode.Rnw
1037  usercode.pdf
1038 lib/R/library/rpart/help/
1039  AnIndex
1040  aliases.rds
1041  paths.rds
1042  rpart.rdb
1043  rpart.rdx
1044 lib/R/library/rpart/help/figures/rpart.png
1045 lib/R/library/rpart/html/
1046  00Index.html
1047  R.css
1048 lib/R/library/rpart/libs/rpart.so
1049 lib/R/library/spatial/
1050  CITATION
1051  DESCRIPTION
1052  INDEX
1053  NAMESPACE
1054  NEWS
1055  PP.files
1056 lib/R/library/spatial/Meta/
1057  Rd.rds
1058  features.rds
1059  hsearch.rds
1060  links.rds
1061  nsInfo.rds
1062  package.rds
1063 lib/R/library/spatial/R/
1064  spatial
1065  spatial.rdb
1066  spatial.rdx
1067 lib/R/library/spatial/help/
1068  AnIndex
1069  aliases.rds
1070  paths.rds
1071  spatial.rdb
1072  spatial.rdx
1073 lib/R/library/spatial/html/
1074  00Index.html
1075  R.css
1076 lib/R/library/spatial/libs/spatial.so
1077 lib/R/library/spatial/ppdata/
1078  agter.dat
1079  caveolae.dat
1080  cells.dat
1081  davis.dat
1082  drumlin.dat
1083  eagles.dat
1084  fig1b.dat
1085  fig1c.dat
1086  fig2a.dat
1087  fig2b.dat
1088  fig3a.dat
1089  fig3b.dat
1090  fig3c.dat
1091  grocery.dat
1092  hccells.dat
1093  nztrees.dat
1094  pairfn.dat
1095  pereg.dat
1096  pines.dat
1097  redwood.dat
1098  schools.dat
1099  stowns1.dat
1100  tokyo.dat
1101  towns.dat
1102 lib/R/library/splines/
1103  DESCRIPTION
1104  INDEX
1105  NAMESPACE
1106 lib/R/library/splines/Meta/
1107  Rd.rds
1108  features.rds
1109  hsearch.rds
1110  links.rds
1111  nsInfo.rds
1112  package.rds
1113 lib/R/library/splines/R/
1114  splines
1115  splines.rdb
1116  splines.rdx
1117 lib/R/library/splines/help/
1118  AnIndex
1119  aliases.rds
1120  paths.rds
1121  splines.rdb
1122  splines.rdx
1123 lib/R/library/splines/html/
1124  00Index.html
1125  R.css
1126 lib/R/library/splines/libs/splines.so
1127 lib/R/library/stats/
1128  COPYRIGHTS.modreg
1129  DESCRIPTION
1130  INDEX
1131  NAMESPACE
1132  SOURCES.ts
1133 lib/R/library/stats/Meta/
1134  Rd.rds
1135  demo.rds
1136  features.rds
1137  hsearch.rds
1138  links.rds
1139  nsInfo.rds
1140  package.rds
1141 lib/R/library/stats/R/
1142  stats
1143  stats.rdb
1144  stats.rdx
1145 lib/R/library/stats/demo/
1146  glm.vr.R
1147  lm.glm.R
1148  nlm.R
1149  smooth.R
1150 lib/R/library/stats/help/
1151  AnIndex
1152  aliases.rds
1153  paths.rds
1154  stats.rdb
1155  stats.rdx
1156 lib/R/library/stats/html/
1157  00Index.html
1158  R.css
1159 lib/R/library/stats/libs/stats.so
1160 lib/R/library/stats4/
1161  DESCRIPTION
1162  INDEX
1163  NAMESPACE
1164 lib/R/library/stats4/Meta/
1165  Rd.rds
1166  features.rds
1167  hsearch.rds
1168  links.rds
1169  nsInfo.rds
1170  package.rds
1171 lib/R/library/stats4/R/
1172  stats4
1173  stats4.rdb
1174  stats4.rdx
1175 lib/R/library/stats4/help/
1176  AnIndex
1177  aliases.rds
1178  paths.rds
1179  stats4.rdb
1180  stats4.rdx
1181 lib/R/library/stats4/html/
1182  00Index.html
1183  R.css
1184 lib/R/library/survival/
1185  CITATION
1186  COPYRIGHTS
1187  DESCRIPTION
1188  INDEX
1189  NAMESPACE
1190  NEWS.Rd
1191 lib/R/library/survival/Meta/
1192  Rd.rds
1193  data.rds
1194  features.rds
1195  hsearch.rds
1196  links.rds
1197  nsInfo.rds
1198  package.rds
1199  vignette.rds
1200 lib/R/library/survival/R/
1201  survival
1202  survival.rdb
1203  survival.rdx
1204 lib/R/library/survival/data/
1205  Rdata.rdb
1206  Rdata.rds
1207  Rdata.rdx
1208 lib/R/library/survival/doc/
1209  adjcurve.R
1210  adjcurve.Rnw
1211  adjcurve.pdf
1212  approximate.R
1213  approximate.Rnw
1214  approximate.pdf
1215  compete.R
1216  compete.Rnw
1217  compete.pdf
1218  concordance.R
1219  concordance.Rnw
1220  concordance.pdf
1221  index.html
1222  multi.Rnw
1223  multi.pdf
1224  other.Rnw
1225  other.pdf
1226  population.R
1227  population.Rnw
1228  population.pdf
1229  splines.R
1230  splines.Rnw
1231  splines.pdf
1232  survival.R
1233  survival.Rnw
1234  survival.pdf
1235  tiedtimes.R
1236  tiedtimes.Rnw
1237  tiedtimes.pdf
1238  timedep.R
1239  timedep.Rnw
1240  timedep.pdf
1241  validate.R
1242  validate.Rnw
1243  validate.pdf
1244 lib/R/library/survival/help/
1245  AnIndex
1246  aliases.rds
1247  paths.rds
1248  survival.rdb
1249  survival.rdx
1250 lib/R/library/survival/help/figures/logo.png
1251 lib/R/library/survival/html/
1252  00Index.html
1253  R.css
1254 lib/R/library/survival/libs/survival.so
1255 lib/R/library/tcltk/
1256  DESCRIPTION
1257  INDEX
1258  NAMESPACE
1259 lib/R/library/tcltk/Meta/
1260  Rd.rds
1261  demo.rds
1262  features.rds
1263  hsearch.rds
1264  links.rds
1265  nsInfo.rds
1266  package.rds
1267 lib/R/library/tcltk/R/
1268  tcltk
1269  tcltk.rdb
1270  tcltk.rdx
1271 lib/R/library/tcltk/demo/
1272  tkcanvas.R
1273  tkdensity.R
1274  tkfaq.R
1275  tkttest.R
1276 lib/R/library/tcltk/exec/
1277  Tk-frontend.R
1278  console.tcl
1279  hierarchy.tcl
1280  pkgIndex.tcl
1281  progressbar.tcl
1282  util-dump.tcl
1283  util-expand.tcl
1284  util-number.tcl
1285  util-string.tcl
1286  util-tk.tcl
1287  util.tcl
1288  widget.tcl
1289 lib/R/library/tcltk/help/
1290  AnIndex
1291  aliases.rds
1292  paths.rds
1293  tcltk.rdb
1294  tcltk.rdx
1295 lib/R/library/tcltk/html/
1296  00Index.html
1297  R.css
1298 lib/R/library/tcltk/libs/tcltk.so
1299 lib/R/library/tools/
1300  DESCRIPTION
1301  INDEX
1302  NAMESPACE
1303 lib/R/library/tools/Meta/
1304  Rd.rds
1305  features.rds
1306  hsearch.rds
1307  links.rds
1308  nsInfo.rds
1309  package.rds
1310 lib/R/library/tools/R/
1311  sysdata.rdb
1312  sysdata.rdx
1313  tools
1314  tools.rdb
1315  tools.rdx
1316 lib/R/library/tools/help/
1317  AnIndex
1318  aliases.rds
1319  paths.rds
1320  tools.rdb
1321  tools.rdx
1322 lib/R/library/tools/html/
1323  00Index.html
1324  R.css
1325 lib/R/library/tools/libs/tools.so
1326 lib/R/library/translations/DESCRIPTION
1327 lib/R/library/utils/
1328  DESCRIPTION
1329  INDEX
1330  NAMESPACE
1331  iconvlist
1332 lib/R/library/utils/Meta/
1333  Rd.rds
1334  features.rds
1335  hsearch.rds
1336  links.rds
1337  nsInfo.rds
1338  package.rds
1339 lib/R/library/utils/R/
1340  sysdata.rdb
1341  sysdata.rdx
1342  utils
1343  utils.rdb
1344  utils.rdx
1345 lib/R/library/utils/Sweave/
1346  Sweave-test-1.Rnw
1347  example-1.Rnw
1348 lib/R/library/utils/doc/Sweave.pdf
1349 lib/R/library/utils/help/
1350  AnIndex
1351  aliases.rds
1352  paths.rds
1353  utils.rdb
1354  utils.rdx
1355 lib/R/library/utils/html/
1356  00Index.html
1357  R.css
1358 lib/R/library/utils/libs/utils.so
1359 lib/R/library/utils/misc/
1360  exDIF.csv
1361  exDIF.dif
1362 lib/R/modules/
1363  R_X11.so
1364  R_de.so
1365  internet.so
1366  lapack.so
1367 lib/R/share/R/
1368  REMOVE.R
1369  examples-footer.R
1370  examples-header.R
1371  nspackloader.R
1372  tests-startup.R
1373 lib/R/share/Rd/macros/system.Rd
1374 lib/R/share/dictionaries/en_stats.rds
1375 lib/R/share/encodings/
1376  Adobe-glyphlist
1377  character-sets
1378 lib/R/share/java/
1379  README
1380  getsp.class
1381 lib/R/share/licenses/
1382  AGPL-3
1383  Artistic-2.0
1384  BSD_2_clause
1385  BSD_3_clause
1386  GPL-2
1387  GPL-3
1388  LGPL-2
1389  LGPL-2.1
1390  LGPL-3
1391  MIT
1392  license.db
1393 lib/R/share/make/
1394  basepkg.mk
1395  check_vars_ini.mk
1396  check_vars_out.mk
1397  clean.mk
1398  config.mk
1399  lazycomp.mk
1400  shlib.mk
1401  vars.mk
1402  winshlib.mk
1403 lib/R/share/sh/echo.sh
1404 lib/R/share/texmf/bibtex/bib/
1405  RJournal.bib
1406  Rnews.bib
1407 lib/R/share/texmf/bibtex/bst/jss.bst
1408 lib/R/share/texmf/tex/latex/
1409  Rd.sty
1410  Sweave.sty
1411  jss.cls
1412  omsaer.fd
1413  omsaett.fd
1414  omscmtt.fd
1415  ts1aer.fd
1416  ts1aett.fd
1417 lib/pkgconfig/libR.pc
1418 share/man/man1/
1419  R.1.gz
1420  Rscript.1.gz
1421
1422
1423 [FILE:7804:manifests/plist.nls]
1424 lib/R/library/KernSmooth/po/de/LC_MESSAGES/R-KernSmooth.mo
1425 lib/R/library/KernSmooth/po/en@quot/LC_MESSAGES/R-KernSmooth.mo
1426 lib/R/library/KernSmooth/po/fr/LC_MESSAGES/R-KernSmooth.mo
1427 lib/R/library/KernSmooth/po/ko/LC_MESSAGES/R-KernSmooth.mo
1428 lib/R/library/KernSmooth/po/pl/LC_MESSAGES/R-KernSmooth.mo
1429 lib/R/library/MASS/po/de/LC_MESSAGES/R-MASS.mo
1430 lib/R/library/MASS/po/en@quot/LC_MESSAGES/R-MASS.mo
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1442  R-Matrix.mo
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1463  cluster.mo
1464 lib/R/library/cluster/po/fr/LC_MESSAGES/R-cluster.mo
1465 lib/R/library/cluster/po/ko/LC_MESSAGES/
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1467  cluster.mo
1468 lib/R/library/cluster/po/pl/LC_MESSAGES/R-cluster.mo
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1553  R-stats.mo
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1557  R-utils.mo
1558  R.mo
1559  RGui.mo
1560  grDevices.mo
1561  graphics.mo
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1565  splines.mo
1566  stats.mo
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1571  R-compiler.mo
1572  R-grDevices.mo
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1574  R-grid.mo
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1578  R-stats.mo
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1580  R-tcltk.mo
1581  R-tools.mo
1582  R-utils.mo
1583  R.mo
1584  RGui.mo
1585  grDevices.mo
1586  graphics.mo
1587  grid.mo
1588  methods.mo
1589  parallel.mo
1590  splines.mo
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1596 lib/R/library/translations/en@quot/LC_MESSAGES/
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1598  R-compiler.mo
1599  R-grDevices.mo
1600  R-graphics.mo
1601  R-grid.mo
1602  R-methods.mo
1603  R-parallel.mo
1604  R-splines.mo
1605  R-stats.mo
1606  R-stats4.mo
1607  R-tcltk.mo
1608  R-tools.mo
1609  R-utils.mo
1610  R.mo
1611  grDevices.mo
1612  graphics.mo
1613  grid.mo
1614  methods.mo
1615  parallel.mo
1616  splines.mo
1617  stats.mo
1618  tcltk.mo
1619  tools.mo
1620  utils.mo
1621 lib/R/library/translations/en_GB/LC_MESSAGES/
1622  R-grDevices.mo
1623  R.mo
1624  grDevices.mo
1625 lib/R/library/translations/es/LC_MESSAGES/
1626  R.mo
1627  RGui.mo
1628  graphics.mo
1629 lib/R/library/translations/fa/LC_MESSAGES/
1630  R-base.mo
1631  R-utils.mo
1632  R.mo
1633  RGui.mo
1634 lib/R/library/translations/fr/LC_MESSAGES/
1635  R-base.mo
1636  R-compiler.mo
1637  R-grDevices.mo
1638  R-graphics.mo
1639  R-grid.mo
1640  R-methods.mo
1641  R-parallel.mo
1642  R-splines.mo
1643  R-stats.mo
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1645  R-tcltk.mo
1646  R-tools.mo
1647  R-utils.mo
1648  R.mo
1649  RGui.mo
1650  grDevices.mo
1651  graphics.mo
1652  grid.mo
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1654  parallel.mo
1655  splines.mo
1656  stats.mo
1657  tcltk.mo
1658  tools.mo
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1660  R-base.mo
1661  R-grDevices.mo
1662  R-graphics.mo
1663  R-stats.mo
1664  R-stats4.mo
1665  R-tcltk.mo
1666  R-tools.mo
1667  R.mo
1668  RGui.mo
1669  grDevices.mo
1670  graphics.mo
1671  grid.mo
1672  stats.mo
1673  tools.mo
1674 lib/R/library/translations/ja/LC_MESSAGES/
1675  R-base.mo
1676  R-compiler.mo
1677  R-grDevices.mo
1678  R-graphics.mo
1679  R-grid.mo
1680  R-methods.mo
1681  R-splines.mo
1682  R-stats.mo
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1685  R-tools.mo
1686  R-utils.mo
1687  R.mo
1688  RGui.mo
1689  grDevices.mo
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1691  grid.mo
1692  methods.mo
1693  splines.mo
1694  stats.mo
1695  tcltk.mo
1696  tools.mo
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1698  R-base.mo
1699  R-compiler.mo
1700  R-grDevices.mo
1701  R-graphics.mo
1702  R-grid.mo
1703  R-methods.mo
1704  R-parallel.mo
1705  R-splines.mo
1706  R-stats.mo
1707  R-stats4.mo
1708  R-tcltk.mo
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1710  R-utils.mo
1711  R.mo
1712  RGui.mo
1713  grDevices.mo
1714  graphics.mo
1715  grid.mo
1716  methods.mo
1717  parallel.mo
1718  splines.mo
1719  stats.mo
1720  tcltk.mo
1721  tools.mo
1722  utils.mo
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1725  R.mo
1726  RGui.mo
1727  graphics.mo
1728 lib/R/library/translations/pl/LC_MESSAGES/
1729  R-base.mo
1730  R-compiler.mo
1731  R-grDevices.mo
1732  R-graphics.mo
1733  R-grid.mo
1734  R-methods.mo
1735  R-parallel.mo
1736  R-splines.mo
1737  R-stats.mo
1738  R-stats4.mo
1739  R-tcltk.mo
1740  R-tools.mo
1741  R-utils.mo
1742  R.mo
1743  RGui.mo
1744  grDevices.mo
1745  graphics.mo
1746  grid.mo
1747  methods.mo
1748  parallel.mo
1749  splines.mo
1750  stats.mo
1751  tcltk.mo
1752  tools.mo
1753  utils.mo
1754 lib/R/library/translations/pt_BR/LC_MESSAGES/
1755  R-base.mo
1756  R-compiler.mo
1757  R-grDevices.mo
1758  R-graphics.mo
1759  R-grid.mo
1760  R-methods.mo
1761  R-splines.mo
1762  R-stats.mo
1763  R-stats4.mo
1764  R-tcltk.mo
1765  R-tools.mo
1766  R-utils.mo
1767  R.mo
1768  RGui.mo
1769  grDevices.mo
1770  graphics.mo
1771  grid.mo
1772  methods.mo
1773  splines.mo
1774  stats.mo
1775  tcltk.mo
1776  tools.mo
1777 lib/R/library/translations/ru/LC_MESSAGES/
1778  R-base.mo
1779  R-compiler.mo
1780  R-grDevices.mo
1781  R-graphics.mo
1782  R-grid.mo
1783  R-methods.mo
1784  R-parallel.mo
1785  R-splines.mo
1786  R-stats.mo
1787  R-stats4.mo
1788  R-tcltk.mo
1789  R-tools.mo
1790  R-utils.mo
1791  R.mo
1792  RGui.mo
1793  grDevices.mo
1794  graphics.mo
1795  grid.mo
1796  methods.mo
1797  parallel.mo
1798  splines.mo
1799  stats.mo
1800  tcltk.mo
1801  tools.mo
1802 lib/R/library/translations/tr/LC_MESSAGES/
1803  R-base.mo
1804  R-stats.mo
1805  R-stats4.mo
1806  R-tools.mo
1807  R-utils.mo
1808  R.mo
1809  RGui.mo
1810  graphics.mo
1811 lib/R/library/translations/zh_CN/LC_MESSAGES/
1812  R-base.mo
1813  R-compiler.mo
1814  R-grDevices.mo
1815  R-graphics.mo
1816  R-grid.mo
1817  R-methods.mo
1818  R-parallel.mo
1819  R-splines.mo
1820  R-stats.mo
1821  R-stats4.mo
1822  R-tcltk.mo
1823  R-tools.mo
1824  R-utils.mo
1825  R.mo
1826  RGui.mo
1827  grDevices.mo
1828  graphics.mo
1829  grid.mo
1830  methods.mo
1831  parallel.mo
1832  splines.mo
1833  stats.mo
1834  tcltk.mo
1835  tools.mo
1836 lib/R/library/translations/zh_TW/LC_MESSAGES/
1837  R.mo
1838  RGui.mo
1839  graphics.mo
1840
1841
1842 [FILE:584:manifests/plist.docs]
1843 share/doc/R/
1844  AUTHORS
1845  BioC_mirrors.csv
1846  CRAN_mirrors.csv
1847  FAQ
1848  KEYWORDS
1849  KEYWORDS.db
1850  NEWS
1851  NEWS.0
1852  NEWS.1
1853  NEWS.2
1854  NEWS.pdf
1855  NEWS.rds
1856  RESOURCES
1857  THANKS
1858 share/doc/R/html/
1859  NEWS.2.html
1860  NEWS.html
1861  R.css
1862  Rlogo.pdf
1863  Rlogo.svg
1864  Search.html
1865  SearchOn.html
1866  about.html
1867  favicon.ico
1868  index.html
1869  left.jpg
1870  logo.jpg
1871  packages-head-utf8.html
1872  packages.html
1873  resources.html
1874  right.jpg
1875  up.jpg
1876 share/doc/R/manual/
1877  R-FAQ.html
1878  R-admin.html
1879  R-data.html
1880  R-exts.html
1881  R-intro.html
1882  R-ints.html
1883  R-lang.html
1884 share/doc/R/manual/images/
1885  QQ.png
1886  ecdf.png
1887  fig11.png
1888  fig12.png
1889  hist.png
1890  ice.png
1891
1892
1893 [FILE:238:patches/patch-configure]
1894 --- configure.orig      2020-02-21 23:16:00 UTC
1895 +++ configure
1896 @@ -7462,6 +7462,7 @@ if test $ac_compiler_gnu = yes; then
1897  else
1898    GFC=
1899  fi
1900 +G77=yes
1901  ac_ext=c
1902  ac_cpp='$CPP $CPPFLAGS'
1903  ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
1904
1905
1906 [FILE:219:patches/patch-m4_R.m4]
1907 --- m4/R.m4.orig        2019-09-06 22:15:02 UTC
1908 +++ m4/R.m4
1909 @@ -3973,7 +3973,7 @@ case "${host_os}" in
1910    darwin*)
1911      R_SYSTEM_ABI="osx"
1912      ;;
1913 -  freebsd*)
1914 +  dragonfly*|freebsd*)
1915      R_SYSTEM_ABI="freebsd"
1916      ;;
1917    *)
1918
1919
1920 [FILE:1053:patches/patch-src_extra_blas_Makefile.in]
1921 --- src/extra/blas/Makefile.in.orig     2019-03-28 23:02:34 UTC
1922 +++ src/extra/blas/Makefile.in
1923 @@ -19,7 +19,7 @@ SOURCES = blas00.c blas.f cmplxblas.f
1924  Rblas_la = libRblas$(R_DYLIB_EXT)
1925  ## @RBLAS_LDFLAGS@ is used on macOS
1926  ## first for internal BLAS
1927 -Rblas_la_LIBADD = @RBLAS_LDFLAGS@ $(FLIBS_IN_SO)
1928 +Rblas_la_LIBADD = -Wl,-soname,libRblas.so.%%LIBVER%% $(FLIBS_IN_SO)
1929  ## then external one
1930  Rblas_la_LIBADD0 = @RBLAS_LDFLAGS@
1931
1932 @@ -43,6 +43,7 @@ Rblas_install: $(Rblas_la)
1933         @$(MKINSTALLDIRS) "$(DESTDIR)$(Rexeclibdir)"
1934         @$(SHELL) $(top_srcdir)/tools/copy-if-change $(Rblas_la) \
1935           "$(DESTDIR)$(Rexeclibdir)/$(Rblas_la)"
1936 +       @cd $(DESTDIR)$(Rexeclibdir) && ln -s $(Rblas_la) $(Rblas_la).%%LIBVER%%
1937
1938  Rblas_install-strip: $(Rblas_la)
1939         @$(MKINSTALLDIRS) "$(DESTDIR)$(Rexeclibdir)"
1940 @@ -50,6 +51,7 @@ Rblas_install-strip: $(Rblas_la)
1941         @if test -n "$(STRIP_SHARED_LIB)"; then \
1942           $(STRIP_SHARED_LIB) "$(DESTDIR)$(Rexeclibdir)/$(Rblas_la)" ;\
1943         fi
1944 +       @cd "$(DESTDIR)$(Rexeclibdir)" && ln -s $(Rblas_la) $(Rblas_la).%%LIBVER%%
1945
1946  mostlyclean: clean
1947  clean:
1948
1949
1950 [FILE:412:patches/patch-src_extra_intl_config.charset]
1951 --- src/extra/intl/config.charset.orig  2018-09-25 08:46:48 UTC
1952 +++ src/extra/intl/config.charset
1953 @@ -345,7 +345,7 @@ case "$os" in
1954         #echo "sun_eu_greek ?" # what is this?
1955         echo "UTF-8 UTF-8"
1956         ;;
1957 -    freebsd* | os2*)
1958 +    dragonfly* | freebsd* | os2*)
1959         # FreeBSD 4.2 doesn't have nl_langinfo(CODESET); therefore
1960         # localcharset.c falls back to using the full locale name
1961         # from the environment variables.
1962
1963
1964 [FILE:223:patches/patch-src_extra_tre_tre-internal.h]
1965 --- src/extra/tre/tre-internal.h.orig   2018-09-25 08:46:39 UTC
1966 +++ src/extra/tre/tre-internal.h
1967 @@ -18,6 +18,7 @@
1968  #endif /* !HAVE_WCTYPE_H */
1969
1970  #include <ctype.h>
1971 +#include <stdint.h>
1972  #include "tre.h"
1973
1974  #ifdef TRE_DEBUG
1975
1976
1977 [FILE:833:patches/patch-src_library_parallel_R_detectCores.R]
1978 --- src/library/parallel/R/detectCores.R.orig   2018-09-25 08:45:29 UTC
1979 +++ src/library/parallel/R/detectCores.R
1980 @@ -35,6 +35,7 @@ detectCores <-
1981                       darwin = if(logical) "/usr/sbin/sysctl -n hw.logicalcpu 2>/dev/null" else "/usr/sbin/sysctl -n hw.physicalcpu 2>/dev/null",
1982                       solaris = if(logical) "/usr/sbin/psrinfo -v | grep 'Status of.*processor' | wc -l" else "/bin/kstat -p -m cpu_info | grep :core_id | cut -f2 | uniq | wc -l",
1983                       freebsd = "/sbin/sysctl -n hw.ncpu 2>/dev/null",
1984 +                     dragonfly = "/sbin/sysctl -n hw.ncpu 2>/dev/null",
1985                       openbsd = "/sbin/sysctl -n hw.ncpu 2>/dev/null",
1986                       irix  = c("hinv | grep Processors | sed 's: .*::'", "hinv | grep '^Processor '| wc -l"))
1987              for (i in seq(systems))
1988
1989
1990 [FILE:853:patches/patch-src_main_Makefile.in]
1991 --- src/main/Makefile.in.orig   2019-03-28 23:02:31 UTC
1992 +++ src/main/Makefile.in
1993 @@ -110,7 +110,7 @@ libR_la_LIBADD =  $(MAIN_OBJS) $(EXTRA_S
1994  libR_la_DEPENDENCIES = $(STATIC_LIBS) $(R_TZONE) @WANT_R_SHLIB_TRUE@ @USE_EXPORTFILES_TRUE@ $(top_builddir)/etc/R.exp
1995
1996  ## The next is needed for macOS only at present
1997 -LIBR_LDFLAGS = @LIBR_LDFLAGS@
1998 +LIBR_LDFLAGS = -Wl,-soname,libR.so.%%LIBVER%%
1999
2000
2001  all: R
2002 @@ -200,6 +200,7 @@ install-bin: installdirs
2003  install-lib: installdirs
2004         @$(MKINSTALLDIRS) "$(DESTDIR)$(Rexeclibdir)"
2005         @$(SHELL) $(top_srcdir)/tools/copy-if-change $(libR_la) "$(DESTDIR)$(Rexeclibdir)/$(libR_la)"
2006 +       @cd "$(DESTDIR)$(Rexeclibdir)" && ln -s $(libR_la) $(libR_la).%%LIBVER%%
2007  install-static: installdirs
2008         @$(MKINSTALLDIRS) "$(DESTDIR)$(Rexeclibdir)"
2009         @$(SHELL) $(top_srcdir)/tools/copy-if-change libR.a "$(DESTDIR)$(Rexeclibdir)/libR.a"
2010
2011
2012 [FILE:635:patches/patch-src_main_complex.c]
2013 --- src/main/complex.c.orig     2018-09-25 08:46:25 UTC
2014 +++ src/main/complex.c
2015 @@ -139,7 +139,7 @@ static double complex mycpow (double com
2016      } else if (yi == 0.0 && yr == (k = (int) yr) && abs(k) <= 65536)
2017         Z = R_cpow_n(X, k);
2018      else
2019 -#ifdef HAVE_CPOW
2020 +#if defined(HAVE_CPOW) && !defined(__FreeBSD__)
2021         Z = cpow(X, Y);
2022  #else
2023      {
2024 @@ -393,7 +393,7 @@ void attribute_hidden z_prec_r(Rcomplex
2025     Currently (Feb 2011) they are used on FreeBSD.
2026  */
2027
2028 -#ifndef HAVE_CLOG
2029 +#if !defined(HAVE_CLOG) || defined(__FreeBSD__)
2030  #define clog R_clog
2031  /* FIXME: maybe add full IEC60559 support */
2032  static double complex clog(double complex x)
2033
2034
2035 [FILE:1502:patches/patch-src_modules_lapack_Makefile.in]
2036 --- src/modules/lapack/Makefile.in.orig 2019-03-28 23:02:36 UTC
2037 +++ src/modules/lapack/Makefile.in
2038 @@ -84,16 +84,18 @@ $(lapack_la): $(lapack_la_OBJECTS)
2039  ## Include BLAS here, as with (static) ATLAS that pulls all the
2040  ## BLAS routines into one place.
2041  $(Rlapack_la): $(LIBOBJECTS)
2042 -       $(DYLIB_LINK) -o $@ $(LIBOBJECTS) @RLAPACK_LDFLAGS@ @BLAS_LIBS@ $(Rlapack_la_LIBADD)
2043 +       $(DYLIB_LINK) -o $@ $(LIBOBJECTS)  -Wl,-soname,libRlapack.so.%%LIBVER%% @BLAS_LIBS@ $(Rlapack_la_LIBADD)
2044
2045  Rlapack_install: $(Rlapack_la)
2046         @$(MKINSTALLDIRS) "$(DESTDIR)$(Rexeclibdir)"
2047         @$(SHELL) $(top_srcdir)/tools/copy-if-change $(Rlapack_la) \
2048           "$(Rexeclibdir)/$(Rlapack_la)"
2049 +       @cd $(Rexeclibdir) && ln -s $(Rlapack_la) $(Rlapack_la).%%LIBVER%%
2050
2051  install: installdirs
2052         @$(SHELL) $(top_srcdir)/tools/copy-if-change $(lapack_la) "$(DESTDIR)$(Rexecmodulesdir)/$(lapack_la)"
2053 -@USE_EXTERNAL_LAPACK_FALSE@    @$(SHELL) $(top_srcdir)/tools/copy-if-change $(Rlapack_la) "$(DESTDIR)$(Rexeclibdir)/$(Rlapack_la)"
2054 +@USE_EXTERNAL_LAPACK_FALSE@    @cd "$(DESTDIR)$(Rexeclibdir)" && ln -sf $(Rlapack_la) $(Rlapack_la).%%LIBVER%%
2055 +
2056  installdirs:
2057         @$(MKINSTALLDIRS) "$(DESTDIR)$(Rexecmodulesdir)"
2058  install-strip-Rlapack:
2059 @@ -106,6 +108,7 @@ install-strip: @USE_EXTERNAL_LAPACK_FALS
2060         @if test -n "$(STRIP_SHARED_LIB)"; then \
2061           $(STRIP_SHARED_LIB) "$(DESTDIR)$(Rexecmodulesdir)/$(lapack_la)"; \
2062         fi
2063 +       @cd "$(DESTDIR)$(Rexeclibdir)" && ln -s $(Rlapack_la) $(Rlapack_la).%%LIBVER%%
2064  uninstall:
2065         @rm -f "$(Rexecmodulesdir)/$(lapack_la)"
2066
2067